Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5194

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
2,210,672	+		GFF5193	0.31	-0.5
2,210,672	+		GFF5193	0.31	-0.3
2,210,699	+		GFF5193	0.34	+0.7
2,210,762	+		GFF5193	0.39	+0.4
2,210,762	+		GFF5193	0.39	-0.3
2,210,763	-		GFF5193	0.39	+0.9
2,211,032	+		GFF5193	0.62	+0.6
2,211,032	+		GFF5193	0.62	+0.5
2,211,033	-		GFF5193	0.62	+0.0
2,211,033	-		GFF5193	0.62	+0.1
2,211,149	+		GFF5193	0.72	-0.5
2,211,200	+		GFF5193	0.77	-0.3
2,211,200	+		GFF5193	0.77	-1.3
2,211,201	-		GFF5193	0.77	+1.7
2,211,201	-		GFF5193	0.77	+0.1
2,211,201	-		GFF5193	0.77	-0.9
2,211,201	-		GFF5193	0.77	-0.1
2,211,201	-		GFF5193	0.77	-0.1
2,211,201	-		GFF5193	0.77	-1.9
2,211,201	-		GFF5193	0.77	-3.3
2,211,363	-				+0.3
2,211,392	+				+0.6
2,211,392	+				-0.6
2,211,527	-				+0.4
2,211,528	+				+0.0
2,211,541	+				-0.5
2,211,541	+				-0.9
2,211,545	+				-0.7
2,211,546	-				-0.6
2,211,546	-				-0.9
2,211,580	+				-0.5
2,211,580	+				+0.2
2,211,580	+				+0.3
2,211,941	-		GFF5194	0.41	-0.1
2,211,997	+		GFF5194	0.47	-0.5
2,211,997	+		GFF5194	0.47	+0.2
2,212,544	+		GFF5805	0.37	+2.5
2,212,544	+		GFF5805	0.37	+0.5
2,212,545	-		GFF5805	0.38	+0.5
2,212,545	-		GFF5805	0.38	+0.6
2,212,545	-		GFF5805	0.38	-0.6
2,212,545	-		GFF5805	0.38	+1.1
2,212,545	-		GFF5805	0.38	-1.3
2,212,545	-		GFF5805	0.38	+0.1
2,212,545	-		GFF5805	0.38	-1.1
2,212,569	+		GFF5805	0.72	+0.4
2,212,569	+		GFF5805	0.72	-1.4
2,212,569	+		GFF5805	0.72	-1.1
2,212,570	-		GFF5805	0.73	+0.0
2,212,570	-		GFF5805	0.73	-0.0
2,212,580	+		GFF5805	0.87	+0.1
2,212,580	+		GFF5805	0.87	+0.7
2,212,581	-		GFF5805	0.89	+0.7
2,212,581	-		GFF5805	0.89	+0.8
2,212,581	-		GFF5805	0.89	+1.5
2,212,581	-		GFF5805	0.89	+0.4
2,212,581	-		GFF5805	0.89	-2.0
2,212,581	-		GFF5805	0.89	-0.2
2,212,815	-		GFF5195	0.33	+0.1
2,212,815	-		GFF5195	0.33	+1.2
2,213,392	+				-0.3
2,213,392	+				-1.2
2,213,392	+				-1.1
2,213,392	+				-0.3
2,213,393	-				-0.1
2,213,393	-				-1.4
2,213,393	-				-3.1
2,213,407	+				+1.1
2,213,408	-				+0.0