Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF514 and GFF515 are separated by 3 nucleotides GFF515 and GFF516 are separated by 7 nucleotides GFF516 and GFF517 are separated by 38 nucleotides
GFF514 - Esterase/lipase, at 181,816 to 182,778
GFF514
GFF515 - Glutamine amidotransferase class-I (EC 6.3.5.2), at 182,782 to 183,522
GFF515
GFF516 - Acyl-CoA hydrolase (EC 3.1.2.20), at 183,530 to 183,970
GFF516
GFF517 - Lipid A export ATP-binding/permease protein MsbA, at 184,009 to 185,856
GFF517
Position (kb) 182
183
184 Strain fitness (log2 ratio) -2
-1
0
1
2 at 181.924 kb on + strand, within GFF514 at 181.976 kb on - strand, within GFF514 at 181.976 kb on - strand, within GFF514 at 181.976 kb on - strand, within GFF514 at 182.014 kb on + strand, within GFF514 at 182.014 kb on + strand, within GFF514 at 182.059 kb on + strand, within GFF514 at 182.059 kb on + strand, within GFF514 at 182.059 kb on + strand, within GFF514 at 182.059 kb on + strand, within GFF514 at 182.059 kb on + strand, within GFF514 at 182.059 kb on + strand, within GFF514 at 182.060 kb on - strand, within GFF514 at 182.060 kb on - strand, within GFF514 at 182.060 kb on - strand, within GFF514 at 182.060 kb on - strand, within GFF514 at 182.060 kb on - strand, within GFF514 at 182.140 kb on + strand, within GFF514 at 182.140 kb on + strand, within GFF514 at 182.141 kb on - strand, within GFF514 at 182.141 kb on - strand, within GFF514 at 182.562 kb on + strand, within GFF514 at 182.639 kb on - strand, within GFF514 at 182.651 kb on + strand, within GFF514 at 182.652 kb on - strand, within GFF514 at 182.652 kb on - strand, within GFF514 at 182.921 kb on - strand, within GFF515 at 183.205 kb on + strand, within GFF515 at 183.205 kb on + strand, within GFF515 at 183.206 kb on - strand, within GFF515 at 183.380 kb on - strand, within GFF515 at 183.380 kb on - strand, within GFF515 at 183.487 kb on + strand at 183.487 kb on + strand at 183.487 kb on + strand at 183.487 kb on + strand at 183.487 kb on + strand at 183.607 kb on - strand, within GFF516 at 183.607 kb on - strand, within GFF516 at 183.607 kb on - strand, within GFF516 at 183.636 kb on + strand, within GFF516 at 183.636 kb on + strand, within GFF516 at 183.804 kb on + strand, within GFF516 at 183.804 kb on + strand, within GFF516 at 184.124 kb on - strand at 184.135 kb on + strand at 184.136 kb on - strand at 184.504 kb on + strand, within GFF517 at 184.505 kb on - strand, within GFF517 at 184.514 kb on - strand, within GFF517
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 181,924 + GFF514 0.11 -2.3 181,976 - GFF514 0.17 -2.5 181,976 - GFF514 0.17 -0.2 181,976 - GFF514 0.17 -0.5 182,014 + GFF514 0.21 +0.2 182,014 + GFF514 0.21 -0.9 182,059 + GFF514 0.25 -0.2 182,059 + GFF514 0.25 -0.8 182,059 + GFF514 0.25 +0.6 182,059 + GFF514 0.25 -0.1 182,059 + GFF514 0.25 -0.3 182,059 + GFF514 0.25 +0.4 182,060 - GFF514 0.25 +0.4 182,060 - GFF514 0.25 -0.1 182,060 - GFF514 0.25 -1.5 182,060 - GFF514 0.25 +1.0 182,060 - GFF514 0.25 -0.0 182,140 + GFF514 0.34 -0.0 182,140 + GFF514 0.34 -0.6 182,141 - GFF514 0.34 -0.8 182,141 - GFF514 0.34 +0.3 182,562 + GFF514 0.77 +0.2 182,639 - GFF514 0.85 -0.2 182,651 + GFF514 0.87 -0.2 182,652 - GFF514 0.87 +0.2 182,652 - GFF514 0.87 -1.1 182,921 - GFF515 0.19 -0.9 183,205 + GFF515 0.57 -0.7 183,205 + GFF515 0.57 +0.5 183,206 - GFF515 0.57 -1.2 183,380 - GFF515 0.81 +0.6 183,380 - GFF515 0.81 -0.8 183,487 + +0.4 183,487 + -0.8 183,487 + +0.8 183,487 + -1.3 183,487 + +0.8 183,607 - GFF516 0.17 +0.2 183,607 - GFF516 0.17 -0.2 183,607 - GFF516 0.17 -0.2 183,636 + GFF516 0.24 -0.7 183,636 + GFF516 0.24 +0.5 183,804 + GFF516 0.62 +1.3 183,804 + GFF516 0.62 +0.3 184,124 - +2.4 184,135 + -0.1 184,136 - +0.3 184,504 + GFF517 0.27 -0.2 184,505 - GFF517 0.27 -0.6 184,514 - GFF517 0.27 -0.9
Or see this region's nucleotide sequence