Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5049

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
2,060,762	+		GFF5048	0.43	-1.5
2,060,762	+		GFF5048	0.43	+0.1
2,060,763	-		GFF5048	0.43	-2.7
2,060,763	-		GFF5048	0.43	+0.1
2,060,829	-		GFF5048	0.47	+0.5
2,060,829	-		GFF5048	0.47	+1.5
2,061,071	-		GFF5048	0.61	-1.1
2,061,246	+		GFF5048	0.72	-0.2
2,061,639	+				+0.2
2,061,639	+				-0.1
2,061,639	+				+0.6
2,061,719	+				+0.2
2,061,719	+				+0.3
2,061,719	+				+0.8
2,061,720	-				+0.5
2,061,899	+		GFF5049	0.12	+0.3
2,061,900	-		GFF5049	0.12	+0.8
2,062,097	+		GFF5049	0.25	+0.3
2,062,098	-		GFF5049	0.25	+0.6
2,062,250	+		GFF5049	0.35	-1.4
2,062,251	-		GFF5049	0.35	-0.1
2,062,251	-		GFF5049	0.35	-0.2
2,062,251	-		GFF5049	0.35	+1.5
2,062,251	-		GFF5049	0.35	+0.2
2,062,364	+		GFF5049	0.43	+0.3
2,063,091	-				+0.1
2,063,091	-				-0.8
2,063,091	-				-0.6
2,063,237	+				+2.2
2,063,237	+				-0.2
2,063,237	+				+0.5
2,063,238	-				+0.6
2,063,238	-				+1.1
2,063,238	-				+0.5
2,063,375	-				-0.3
2,063,375	-				+0.1
2,063,481	-				-0.2
2,063,481	-				-0.6
2,063,481	-				-0.8
2,063,511	+				+0.3
2,063,511	+				-1.2
2,063,512	-				+0.2
2,063,547	+				-0.2
2,063,547	+				+1.0
2,063,547	+				+0.8
2,063,547	+				-0.0
2,063,547	+				+1.8
2,063,547	+				-0.5
2,063,547	+				-0.3
2,063,548	-				+0.3
2,063,548	-				+0.2
2,063,548	-				-0.1
2,063,548	-				-0.7
2,063,550	-				-1.6
2,063,550	-				+0.1
2,063,561	+				+0.4
2,063,595	+				+0.4
2,063,595	+				-1.2
2,063,595	+				-3.1
2,063,596	-				-0.8
2,063,596	-				+2.0
2,063,703	-				+0.1
2,063,703	-				-1.2
2,063,725	-				+0.1
2,063,749	+				-0.7
2,063,749	+				-0.9
2,063,750	-				+0.1
2,063,750	-				-1.8
2,063,821	+				+1.2
2,063,821	+				-0.2
2,063,821	+				-1.1
2,063,821	+				+0.1
2,063,822	-				-1.1
2,063,822	-				-0.9
2,063,845	-				+0.2
2,063,845	-				+0.6
2,063,854	-				+0.7
2,063,982	+				+0.2
2,063,983	-				+0.6
2,064,005	+				+1.3
2,064,005	+				+0.4
2,064,005	+				-0.7
2,064,006	-				-0.7
2,064,006	-				-0.8
2,064,006	-				+0.1
2,064,006	-				+1.1
2,064,034	+				-0.1
2,064,144	+				-0.7
2,064,212	+				-2.2
2,064,212	+				-0.2