Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5029

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
2,042,040	+		GFF5027	0.79	+1.0
2,042,056	-		GFF5027	0.81	-0.8
2,042,056	-		GFF5027	0.81	+1.1
2,042,095	-		GFF5027	0.84	-1.1
2,042,127	+		GFF5027	0.88	-0.3
2,042,239	-				-1.2
2,042,250	+				-0.2
2,042,250	+				-0.6
2,042,250	+				+0.3
2,042,251	-				-1.1
2,042,547	+		GFF5028	0.41	+0.4
2,042,548	-		GFF5028	0.41	+0.7
2,043,008	-				+0.0
2,043,401	+		GFF5029	0.38	-0.6
2,043,732	-		GFF5029	0.70	+0.6
2,043,738	-		GFF5029	0.70	-0.0
2,043,740	+		GFF5029	0.70	+0.4
2,043,740	+		GFF5029	0.70	+0.1
2,043,741	-		GFF5029	0.71	+0.3
2,043,741	-		GFF5029	0.71	+0.2
2,043,741	-		GFF5029	0.71	+0.2
2,043,741	-		GFF5029	0.71	+1.0
2,043,912	-		GFF5029	0.87	-0.3
2,044,642	-		GFF5030	0.53	-2.1
2,044,680	+		GFF5030	0.57	-0.2
2,044,681	-		GFF5030	0.57	-0.9
2,044,849	-		GFF5030	0.72	+1.8
2,044,852	-		GFF5030	0.72	-0.6
2,044,870	-		GFF5030	0.74	+0.4