Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4977

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
1,993,529	+		GFF4975	0.79	-0.9
1,993,802	+		GFF4976	0.29	-0.0
1,994,023	+		GFF4976	0.77	+0.1
1,994,024	-		GFF4976	0.77	+0.2
1,994,062	+		GFF4976	0.86	-0.8
1,994,063	-		GFF4976	0.86	+2.2
1,994,063	-		GFF4976	0.86	+0.6
1,994,263	+				+1.0
1,994,264	-				+0.1
1,994,333	+				+2.0
1,994,333	+				-0.6
1,994,525	+		GFF4977	0.21	+1.3
1,994,525	+		GFF4977	0.21	-0.2
1,994,525	+		GFF4977	0.21	-0.5
1,994,525	+		GFF4977	0.21	-0.2
1,994,684	+		GFF4977	0.52	+0.7
1,994,829	-		GFF4977	0.80	+0.2
1,994,829	-		GFF4977	0.80	+0.1
1,995,105	+		GFF4978	0.13	+0.5
1,995,106	-		GFF4978	0.13	-1.6
1,995,106	-		GFF4978	0.13	+1.3
1,995,106	-		GFF4978	0.13	+0.4
1,995,106	-		GFF4978	0.13	-0.2
1,995,106	-		GFF4978	0.13	-0.7
1,995,150	+		GFF4978	0.17	+0.4
1,995,151	-		GFF4978	0.17	+1.5
1,995,151	-		GFF4978	0.17	+0.2
1,995,151	-		GFF4978	0.17	+0.2
1,995,151	-		GFF4978	0.17	+0.2
1,995,151	-		GFF4978	0.17	+0.3
1,995,426	+		GFF4978	0.43	-0.6
1,995,427	-		GFF4978	0.43	+0.5
1,995,513	+		GFF4978	0.51	-0.4
1,995,513	+		GFF4978	0.51	-3.5
1,995,514	-		GFF4978	0.51	+0.5
1,995,514	-		GFF4978	0.51	+0.6
1,995,777	+		GFF4978	0.76	+0.2