Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4593

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
1,539,006	-		GFF4592	0.70	+0.1
1,539,179	+		GFF4592	0.78	-1.8
1,539,180	-		GFF4592	0.78	+0.1
1,539,246	-		GFF4592	0.81	-0.3
1,539,251	+		GFF4592	0.82	-0.3
1,539,251	+		GFF4592	0.82	-0.0
1,539,251	+		GFF4592	0.82	-0.5
1,539,377	+		GFF4592	0.88	-0.4
1,539,377	+		GFF4592	0.88	-0.5
1,539,378	-		GFF4592	0.88	+0.7
1,539,378	-		GFF4592	0.88	-1.3
1,539,378	-		GFF4592	0.88	+0.4
1,539,378	-		GFF4592	0.88	+0.9
1,539,378	-		GFF4592	0.88	-0.1
1,539,452	+				+0.7
1,539,452	+				-1.5
1,539,453	-				+0.3
1,539,500	+				-1.5
1,539,500	+				+0.2
1,539,659	-				+0.2
1,540,005	+		GFF4593	0.28	-2.9
1,540,006	-		GFF4593	0.28	-0.9
1,540,104	+		GFF4593	0.37	-2.8
1,540,146	+		GFF4593	0.40	-0.9
1,540,147	-		GFF4593	0.40	-2.1
1,540,147	-		GFF4593	0.40	+0.0
1,540,147	-		GFF4593	0.40	+1.5
1,540,147	-		GFF4593	0.40	+0.4
1,540,176	+		GFF4593	0.43	+0.0
1,540,177	-		GFF4593	0.43	-1.0
1,540,597	+		GFF4593	0.79	+0.2
1,540,641	+		GFF4593	0.82	+0.4
1,540,642	-		GFF4593	0.82	-0.9
1,540,716	+		GFF4593	0.89	+0.4
1,541,048	+		GFF4594	0.43	+0.9
1,541,049	-		GFF4594	0.43	-0.1
1,541,072	+		GFF4594	0.49	-0.3
1,541,073	-		GFF4594	0.49	+1.2
1,541,073	-		GFF4594	0.49	-0.8
1,541,129	+		GFF4594	0.62	+0.3
1,541,130	-		GFF4594	0.62	+0.1
1,541,343	+				+0.8
1,541,343	+				-0.0
1,541,344	-				+0.3
1,541,344	-				-0.9
1,541,344	-				-0.2
1,541,454	+				+0.9
1,541,454	+				-0.1
1,541,455	-				+0.4
1,541,455	-				+0.4
1,541,455	-				-0.3
1,541,455	-				+0.5
1,541,550	+		GFF4595	0.13	+0.5
1,541,550	+		GFF4595	0.13	+0.7
1,541,586	+		GFF4595	0.15	+0.0
1,541,586	+		GFF4595	0.15	-0.2
1,541,587	-		GFF4595	0.15	-0.2
1,541,587	-		GFF4595	0.15	+1.9