Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4580

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
1,521,003	-		GFF4578	0.65	+0.3
1,521,003	-		GFF4578	0.65	+0.9
1,521,065	+		GFF4578	0.72	-1.6
1,521,065	+		GFF4578	0.72	-1.0
1,521,065	+		GFF4578	0.72	-0.2
1,521,065	+		GFF4578	0.72	-1.0
1,521,066	-		GFF4578	0.72	-0.8
1,521,591	+		GFF4579	0.64	-1.5
1,521,592	+		GFF4579	0.64	-0.5
1,521,592	+		GFF4579	0.64	-0.1
1,521,592	+		GFF4579	0.64	+0.0
1,521,592	+		GFF4579	0.64	+1.4
1,521,593	-		GFF4579	0.64	+1.1
1,521,756	+				+0.0
1,521,757	-				+0.2
1,521,757	-				-2.0
1,521,757	-				-0.3
1,521,856	-				-0.5
1,522,248	+		GFF4580	0.34	+1.0
1,522,248	+		GFF4580	0.34	+0.3
1,522,248	+		GFF4580	0.34	-0.0
1,522,248	+		GFF4580	0.34	-1.6
1,522,249	-		GFF4580	0.34	-0.8
1,522,249	-		GFF4580	0.34	-0.9
1,522,249	-		GFF4580	0.34	+0.4
1,522,249	-		GFF4580	0.34	-0.9
1,522,249	-		GFF4580	0.34	+0.5
1,522,249	-		GFF4580	0.34	+0.0
1,522,329	+		GFF4580	0.39	+0.4
1,522,354	-		GFF4580	0.41	-0.0
1,522,354	-		GFF4580	0.41	-0.2
1,522,359	+		GFF4580	0.41	-0.4
1,522,360	-		GFF4580	0.41	-1.2
1,522,431	+		GFF4580	0.46	-0.1
1,522,431	+		GFF4580	0.46	+0.3
1,522,432	-		GFF4580	0.46	-0.3
1,522,558	-		GFF4580	0.55	-1.5
1,522,590	+		GFF4580	0.57	+0.0
1,522,590	+		GFF4580	0.57	-1.7
1,522,863	+		GFF4580	0.75	-0.4
1,522,989	+		GFF4580	0.84	+0.2
1,522,990	-		GFF4580	0.84	-0.5
1,522,990	-		GFF4580	0.84	+0.3
1,523,157	+				-0.1
1,523,157	+				+0.1
1,523,157	+				-0.8
1,523,157	+				-1.6
1,523,157	+				+0.0
1,523,158	-				+0.2
1,523,158	-				-2.1
1,523,158	-				+0.0
1,523,316	+				-0.0
1,523,316	+				-0.8
1,523,316	+				-0.0
1,523,316	+				+0.4
1,523,317	-				-0.6
1,523,317	-				+1.7
1,523,317	-				+1.0
1,523,318	+				-0.5
1,523,318	+				+0.1
1,523,318	+				+0.2
1,523,319	-				-1.0
1,523,326	+				+1.5
1,523,326	+				+1.1
1,523,326	+				-0.3
1,523,326	+				+1.1
1,523,326	+				-0.8
1,523,327	-				-0.5
1,523,327	-				+0.2
1,523,327	-				+0.4
1,523,327	-				-0.2
1,523,327	-				-0.4
1,523,327	-				-0.1
1,523,354	+				+0.1
1,523,354	+				+2.3
1,523,355	-				-0.1
1,523,355	-				+0.8
1,523,505	+				-1.6
1,523,506	-				+1.3
1,523,641	-				-0.5
1,523,670	+				-0.7
1,523,670	+				-1.7
1,523,671	-				-0.3
1,523,671	-				-0.1
1,523,731	+		GFF4581	0.20	-0.9
1,523,731	+		GFF4581	0.20	+0.9
1,523,739	+		GFF4581	0.21	-0.4
1,523,739	+		GFF4581	0.21	+0.2
1,523,739	+		GFF4581	0.21	-0.6
1,523,739	+		GFF4581	0.21	-2.0
1,523,739	+		GFF4581	0.21	-0.8
1,523,740	-		GFF4581	0.21	-1.6
1,523,740	-		GFF4581	0.21	-1.3
1,523,740	-		GFF4581	0.21	-1.2
1,523,740	-		GFF4581	0.21	+0.2
1,523,872	-		GFF4581	0.43	-0.3
1,523,919	+		GFF4581	0.51	-0.6
1,523,919	+		GFF4581	0.51	-1.3
1,523,920	-		GFF4581	0.51	+0.5
1,523,920	-		GFF4581	0.51	-0.8
1,523,978	+		GFF4581	0.61	+0.8
1,523,986	+		GFF4581	0.62	+0.0
1,523,986	+		GFF4581	0.62	+1.4
1,523,986	+		GFF4581	0.62	+0.8
1,523,987	-		GFF4581	0.63	-0.1
1,523,987	-		GFF4581	0.63	+1.5
1,523,987	-		GFF4581	0.63	-0.3
1,524,204	+				+2.4
1,524,205	-				-0.8