Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4426

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
1,357,416	-		GFF4425	0.12	-0.6
1,357,488	+		GFF4425	0.20	+0.6
1,357,488	+		GFF4425	0.20	-0.2
1,357,508	+		GFF4425	0.22	-1.3
1,357,558	-		GFF4425	0.27	+0.0
1,357,779	+		GFF4425	0.51	-2.9
1,357,781	-		GFF4425	0.51	+0.4
1,357,785	+		GFF4425	0.51	+0.9
1,357,786	-		GFF4425	0.51	-0.5
1,357,830	-		GFF4425	0.56	-2.7
1,357,863	-		GFF4425	0.60	-1.3
1,357,864	+		GFF4425	0.60	+0.5
1,357,916	+		GFF4425	0.65	+0.0
1,357,917	-		GFF4425	0.65	-0.0
1,357,937	-		GFF4425	0.67	-1.1
1,358,007	+		GFF4425	0.75	-2.7
1,358,007	+		GFF4425	0.75	+0.7
1,358,257	-				-0.4
1,358,296	-				+0.7
1,358,296	-				+0.6
1,358,296	-				+0.4
1,358,318	-				-0.6
1,358,394	+		GFF4426	0.20	-0.3
1,358,395	-		GFF4426	0.20	-0.5
1,358,395	-		GFF4426	0.20	-0.1
1,358,494	+		GFF4426	0.85	+1.1
1,358,740	-				-0.9
1,358,740	-				+1.1
1,358,742	-				+0.0
1,358,762	-				+0.6
1,358,762	-				-0.3
1,358,790	+				+0.7
1,358,871	+				+0.5
1,358,889	+				-0.4
1,359,110	-		GFF4427	0.46	-1.9
1,359,184	+		GFF4427	0.76	-0.0
1,359,306	+				-0.7
1,359,307	-				+0.3