Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4408

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
1,337,225	+				-0.3
1,337,270	-		GFF4407	0.11	+0.3
1,337,270	-		GFF4407	0.11	-0.6
1,337,350	+		GFF4407	0.20	-0.8
1,337,398	+		GFF4407	0.26	+0.2
1,337,398	+		GFF4407	0.26	+1.0
1,337,398	+		GFF4407	0.26	-1.0
1,337,398	+		GFF4407	0.26	+1.0
1,337,398	+		GFF4407	0.26	+0.3
1,337,398	+		GFF4407	0.26	-0.3
1,337,398	+		GFF4407	0.26	+0.2
1,337,399	-		GFF4407	0.26	-2.4
1,337,399	-		GFF4407	0.26	-0.3
1,337,399	-		GFF4407	0.26	-0.0
1,337,399	-		GFF4407	0.26	-0.7
1,337,595	+		GFF4407	0.48	+1.9
1,337,595	+		GFF4407	0.48	-0.9
1,337,595	+		GFF4407	0.48	-0.2
1,337,596	-		GFF4407	0.48	-0.6
1,337,596	-		GFF4407	0.48	-1.0
1,337,596	-		GFF4407	0.48	-0.2
1,337,596	-		GFF4407	0.48	-0.2
1,337,699	-		GFF4407	0.59	+0.3
1,337,710	+		GFF4407	0.61	+0.2
1,337,711	-		GFF4407	0.61	+0.2
1,337,854	+		GFF4407	0.77	-1.7
1,337,854	+		GFF4407	0.77	-0.8
1,337,854	+		GFF4407	0.77	+0.1
1,337,855	-		GFF4407	0.77	+0.4
1,337,855	-		GFF4407	0.77	-0.6
1,337,855	-		GFF4407	0.77	-0.6
1,337,855	-		GFF4407	0.77	-0.2
1,337,949	+		GFF4407	0.87	+0.7
1,337,950	-		GFF4407	0.87	+0.3
1,337,950	-		GFF4407	0.87	+0.5
1,338,095	+				-0.6
1,338,095	+				-1.4
1,338,095	+				-1.6
1,338,096	-				-0.6
1,338,096	-				-0.6
1,338,096	-				-1.0
1,338,098	-				+0.9
1,338,107	+				-0.3
1,338,107	+				-1.0
1,338,107	+				-0.4
1,338,107	+				+0.2
1,338,107	+				+0.3
1,338,107	+				-1.0
1,338,107	+				-0.4
1,338,108	-				+0.6
1,338,108	-				+0.7
1,338,108	-				-2.7
1,338,108	-				+1.2
1,338,140	+				-0.2
1,338,435	+		GFF4408	0.22	+0.2
1,338,675	+		GFF4408	0.42	-0.6
1,338,675	+		GFF4408	0.42	-2.3
1,338,753	+		GFF4408	0.48	-0.6
1,338,754	-		GFF4408	0.48	-0.6
1,338,864	+		GFF4408	0.58	+0.1
1,338,864	+		GFF4408	0.58	-1.7
1,338,865	-		GFF4408	0.58	-0.3
1,338,865	-		GFF4408	0.58	-3.2
1,338,865	-		GFF4408	0.58	+0.1
1,338,865	-		GFF4408	0.58	+0.5
1,338,935	+		GFF4408	0.63	+0.5
1,338,936	-		GFF4408	0.63	-0.1
1,338,936	-		GFF4408	0.63	+0.1
1,339,002	-		GFF4408	0.69	-2.1
1,339,111	+		GFF4408	0.78	+1.4
1,339,112	-		GFF4408	0.78	+0.2
1,339,112	-		GFF4408	0.78	-0.6
1,339,112	-		GFF4408	0.78	+0.4
1,339,215	+		GFF4408	0.86	-0.4
1,339,218	+		GFF4408	0.87	-1.6
1,339,219	-		GFF4408	0.87	-0.9
1,339,242	+		GFF4408	0.89	+0.1
1,339,339	+				+0.5
1,339,339	+				+0.3
1,339,339	+				-2.9
1,339,339	+				-0.8
1,339,339	+				-0.2
1,339,339	+				+0.3
1,339,340	-				-0.1
1,339,460	-				-0.4
1,339,460	-				+0.7
1,339,460	-				-2.2
1,339,577	+				+0.1
1,339,578	-				-0.6
1,339,579	+				-0.6
1,339,580	-				-0.1
1,339,654	+		GFF4409	0.13	-1.0
1,339,654	+		GFF4409	0.13	+0.0
1,339,654	+		GFF4409	0.13	-0.3
1,339,654	+		GFF4409	0.13	+0.6
1,339,655	-		GFF4409	0.13	+0.0
1,339,707	-		GFF4409	0.15	-1.7
1,339,707	-		GFF4409	0.15	+0.5
1,339,707	-		GFF4409	0.15	+0.1