Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4398

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
1,324,799	+		GFF4396	0.57	-0.4
1,324,799	+		GFF4396	0.57	-0.7
1,324,799	+		GFF4396	0.57	-1.2
1,324,799	+		GFF4396	0.57	+0.2
1,324,800	-		GFF4396	0.57	-0.0
1,324,800	-		GFF4396	0.57	+0.5
1,324,841	-		GFF4396	0.62	+1.1
1,324,997	+		GFF4396	0.82	-0.5
1,324,998	-		GFF4396	0.82	-0.5
1,324,998	-		GFF4396	0.82	-0.0
1,325,079	+				-0.3
1,325,080	-				-0.1
1,325,080	-				-2.1
1,325,284	+		GFF4397	0.22	+0.3
1,325,284	+		GFF4397	0.22	-0.9
1,325,285	-		GFF4397	0.23	+0.2
1,325,398	+		GFF4397	0.63	-0.9
1,325,399	-		GFF4397	0.63	-0.2
1,325,464	+		GFF4397	0.86	+0.2
1,325,851	-		GFF4398	0.38	+0.0
1,325,896	-		GFF4398	0.43	-1.6
1,326,069	+		GFF4398	0.63	+0.1
1,326,151	+		GFF4398	0.72	+0.9
1,326,153	+		GFF4398	0.73	+1.2
1,326,154	-		GFF4398	0.73	-1.7
1,326,247	-		GFF4398	0.84	-1.1
1,326,249	+		GFF4398	0.84	-2.2
1,326,249	+		GFF4398	0.84	+1.1
1,326,250	-		GFF4398	0.84	-2.6
1,326,321	+				-0.3
1,326,322	-				+0.4
1,326,417	+				-0.9
1,326,433	+				+1.5
1,326,442	-				-0.2
1,326,464	+				+0.2
1,326,520	+				-0.8
1,326,526	-				+0.7
1,326,550	+				-1.3
1,326,592	-				-1.3
1,326,656	+				-0.1
1,327,080	+		GFF4399	0.69	+0.1