Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF425 and GFF426 are separated by 6 nucleotides GFF426 and GFF427 overlap by 41 nucleotides GFF427 and GFF428 are separated by 3 nucleotides GFF428 and GFF429 are separated by 28 nucleotides
GFF425 - LysR-family transcriptional regulator, at 96,468 to 97,379
GFF425
GFF426 - Transcriptional regulator, GntR family, at 97,386 to 98,135
GFF426
GFF427 - hypothetical protein, at 98,095 to 98,208
GFF427
GFF428 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 98,212 to 99,876
GFF428
GFF429 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16), at 99,905 to 101,086
GFF429
Position (kb) 98
99
100 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 97.335 kb on + strand at 97.336 kb on - strand at 97.336 kb on - strand at 97.336 kb on - strand at 97.337 kb on - strand at 97.378 kb on - strand at 97.450 kb on + strand at 97.450 kb on + strand at 97.594 kb on + strand, within GFF426 at 97.594 kb on + strand, within GFF426 at 97.594 kb on + strand, within GFF426 at 97.594 kb on + strand, within GFF426 at 97.594 kb on + strand, within GFF426 at 97.595 kb on - strand, within GFF426 at 97.701 kb on - strand, within GFF426 at 98.146 kb on + strand, within GFF427 at 98.147 kb on - strand, within GFF427 at 98.166 kb on + strand, within GFF427 at 98.221 kb on - strand at 98.266 kb on + strand at 98.266 kb on + strand at 98.560 kb on + strand, within GFF428 at 98.560 kb on + strand, within GFF428 at 98.563 kb on + strand, within GFF428 at 98.563 kb on + strand, within GFF428 at 98.564 kb on - strand, within GFF428 at 98.564 kb on - strand, within GFF428 at 98.725 kb on + strand, within GFF428 at 98.726 kb on - strand, within GFF428 at 98.737 kb on + strand, within GFF428 at 98.806 kb on + strand, within GFF428 at 98.806 kb on + strand, within GFF428 at 98.807 kb on - strand, within GFF428 at 98.920 kb on + strand, within GFF428 at 98.920 kb on + strand, within GFF428 at 98.920 kb on + strand, within GFF428 at 98.920 kb on + strand, within GFF428 at 98.921 kb on - strand, within GFF428 at 98.921 kb on - strand, within GFF428 at 98.921 kb on - strand, within GFF428 at 98.921 kb on - strand, within GFF428 at 98.921 kb on - strand, within GFF428 at 98.921 kb on - strand, within GFF428 at 98.921 kb on - strand, within GFF428 at 99.215 kb on - strand, within GFF428 at 99.247 kb on + strand, within GFF428 at 99.304 kb on + strand, within GFF428 at 99.409 kb on + strand, within GFF428 at 99.409 kb on + strand, within GFF428 at 99.410 kb on - strand, within GFF428 at 99.476 kb on - strand, within GFF428 at 99.725 kb on - strand at 99.727 kb on + strand at 99.727 kb on + strand at 99.728 kb on - strand at 100.484 kb on + strand, within GFF429
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 97,335 + +0.2 97,336 - -1.4 97,336 - +0.4 97,336 - -0.4 97,337 - +0.3 97,378 - +0.7 97,450 + -0.9 97,450 + -0.5 97,594 + GFF426 0.28 -0.9 97,594 + GFF426 0.28 -0.9 97,594 + GFF426 0.28 -2.3 97,594 + GFF426 0.28 +0.0 97,594 + GFF426 0.28 -2.0 97,595 - GFF426 0.28 +0.4 97,701 - GFF426 0.42 -3.1 98,146 + GFF427 0.45 -0.5 98,147 - GFF427 0.46 -1.9 98,166 + GFF427 0.62 -0.4 98,221 - -0.3 98,266 + +0.8 98,266 + -1.1 98,560 + GFF428 0.21 -0.2 98,560 + GFF428 0.21 -0.8 98,563 + GFF428 0.21 -2.6 98,563 + GFF428 0.21 -0.2 98,564 - GFF428 0.21 +2.0 98,564 - GFF428 0.21 -1.1 98,725 + GFF428 0.31 -1.3 98,726 - GFF428 0.31 -2.3 98,737 + GFF428 0.32 +0.7 98,806 + GFF428 0.36 -1.0 98,806 + GFF428 0.36 -0.4 98,807 - GFF428 0.36 -0.2 98,920 + GFF428 0.43 +0.1 98,920 + GFF428 0.43 -2.9 98,920 + GFF428 0.43 -0.0 98,920 + GFF428 0.43 -0.2 98,921 - GFF428 0.43 +0.4 98,921 - GFF428 0.43 +0.3 98,921 - GFF428 0.43 +0.5 98,921 - GFF428 0.43 +0.4 98,921 - GFF428 0.43 -1.8 98,921 - GFF428 0.43 -0.2 98,921 - GFF428 0.43 +0.1 99,215 - GFF428 0.60 +0.2 99,247 + GFF428 0.62 +0.1 99,304 + GFF428 0.66 -2.8 99,409 + GFF428 0.72 -1.3 99,409 + GFF428 0.72 -1.1 99,410 - GFF428 0.72 -0.1 99,476 - GFF428 0.76 +1.7 99,725 - -0.9 99,727 + -0.1 99,727 + +1.4 99,728 - +1.7 100,484 + GFF429 0.49 -0.8
Or see this region's nucleotide sequence