Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4154

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
1,069,689	+				+0.5
1,069,689	+				+0.9
1,069,690	-				-0.6
1,069,701	+				+0.3
1,069,744	+				-0.1
1,069,814	+				+0.6
1,069,815	-				-0.4
1,069,815	-				-0.6
1,069,845	-				-0.4
1,070,053	+				-1.2
1,070,091	+				-0.3
1,070,208	+				+0.4
1,070,217	+				-0.3
1,070,274	+				-0.3
1,070,435	+				-0.6
1,070,436	-				+1.5
1,070,447	+				-2.7
1,070,448	-				+1.1
1,070,448	-				-0.3
1,070,658	+				-1.0
1,070,763	+		GFF4154	0.11	+0.3
1,070,845	-		GFF4154	0.20	+0.6
1,070,850	+		GFF4154	0.21	+0.3
1,070,850	+		GFF4154	0.21	+0.5
1,070,850	+		GFF4154	0.21	-0.6
1,070,850	+		GFF4154	0.21	+1.7
1,070,850	+		GFF4154	0.21	+0.5
1,070,850	+		GFF4154	0.21	-1.3
1,070,850	+		GFF4154	0.21	-2.3
1,070,850	+		GFF4154	0.21	+0.3
1,070,850	+		GFF4154	0.21	-0.5
1,070,850	+		GFF4154	0.21	-0.0
1,070,850	+		GFF4154	0.21	+0.5
1,070,850	+		GFF4154	0.21	+0.4
1,070,850	+		GFF4154	0.21	-0.6
1,070,850	+		GFF4154	0.21	-2.0
1,070,850	+		GFF4154	0.21	+0.6
1,070,850	+		GFF4154	0.21	-0.1
1,070,850	+		GFF4154	0.21	-0.6
1,070,851	-		GFF4154	0.21	-1.0
1,070,851	-		GFF4154	0.21	-2.6
1,070,851	-		GFF4154	0.21	-0.3
1,070,851	-		GFF4154	0.21	-2.9
1,070,851	-		GFF4154	0.21	-0.4
1,070,851	-		GFF4154	0.21	+0.1
1,070,851	-		GFF4154	0.21	+0.2
1,070,851	-		GFF4154	0.21	-0.3
1,070,851	-		GFF4154	0.21	-0.5
1,070,851	-		GFF4154	0.21	+0.3
1,070,851	-		GFF4154	0.21	-2.3
1,070,851	-		GFF4154	0.21	+0.1
1,070,851	-		GFF4154	0.21	-0.3
1,070,851	-		GFF4154	0.21	-0.9
1,070,852	+		GFF4154	0.21	+0.5
1,070,852	+		GFF4154	0.21	-0.2
1,070,853	-		GFF4154	0.21	+0.1
1,070,881	+		GFF4154	0.24	+0.5
1,070,881	+		GFF4154	0.24	-0.9
1,070,881	+		GFF4154	0.24	+0.2
1,070,882	-		GFF4154	0.24	+0.2
1,070,882	-		GFF4154	0.24	-0.3
1,071,048	+		GFF4154	0.43	-1.4
1,071,048	+		GFF4154	0.43	-0.5
1,071,049	-		GFF4154	0.44	+0.2
1,071,171	+		GFF4154	0.58	+0.4
1,071,171	+		GFF4154	0.58	-0.1
1,071,171	+		GFF4154	0.58	+0.7
1,071,172	-		GFF4154	0.58	-0.0
1,071,172	-		GFF4154	0.58	+0.0
1,071,285	+		GFF4154	0.71	+1.2
1,071,285	+		GFF4154	0.71	-0.4
1,071,285	+		GFF4154	0.71	+0.2
1,071,285	+		GFF4154	0.71	-0.4
1,071,285	+		GFF4154	0.71	-0.2
1,071,285	+		GFF4154	0.71	-0.5
1,071,460	+				-0.9
1,071,612	+				-1.2
1,071,612	+				+1.1
1,071,612	+				-1.8
1,071,612	+				+0.5
1,071,612	+				-0.3
1,071,612	+				-2.6
1,071,612	+				-0.2
1,071,613	-				+0.5
1,071,613	-				-2.4
1,071,613	-				+0.8
1,071,854	-		GFF4155	0.11	+0.7
1,071,928	+		GFF4155	0.15	-0.8
1,071,928	+		GFF4155	0.15	-0.2
1,071,928	+		GFF4155	0.15	+0.2
1,071,970	-		GFF4155	0.17	-0.3
1,072,157	-		GFF4155	0.26	+0.3
1,072,237	+		GFF4155	0.30	-0.6
1,072,237	+		GFF4155	0.30	+0.3
1,072,237	+		GFF4155	0.30	-0.6
1,072,238	-		GFF4155	0.30	+0.0
1,072,238	-		GFF4155	0.30	+0.2
1,072,238	-		GFF4155	0.30	+0.5
1,072,238	-		GFF4155	0.30	-0.3
1,072,345	+		GFF4155	0.35	-1.5
1,072,346	-		GFF4155	0.35	-1.4
1,072,346	-		GFF4155	0.35	+0.4
1,072,405	+		GFF4155	0.38	+0.5
1,072,405	+		GFF4155	0.38	+0.6
1,072,406	-		GFF4155	0.38	-1.0
1,072,406	-		GFF4155	0.38	+0.6
1,072,406	-		GFF4155	0.38	+1.2
1,072,406	-		GFF4155	0.38	-0.5
1,072,519	+		GFF4155	0.44	+0.4
1,072,520	-		GFF4155	0.44	+0.4