Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4017 and GFF4018 overlap by 1 nucleotides GFF4018 and GFF4019 are separated by 60 nucleotides GFF4019 and GFF4020 are separated by 34 nucleotides
GFF4017 - Methionine aminopeptidase (EC 3.4.11.18), at 933,311 to 934,123
GFF4017
GFF4018 - FIG01219929: hypothetical protein, at 934,123 to 934,353
GFF4018
GFF4019 - FIG006231: RNA-binding protein, at 934,414 to 934,887
GFF4019
GFF4020 - Huntingtin interacting protein E-like protein, at 934,922 to 936,148
GFF4020
Position (kb) 934
935 Strain fitness (log2 ratio) -2
-1
0
1 at 933.588 kb on + strand, within GFF4017 at 933.615 kb on + strand, within GFF4017 at 933.729 kb on + strand, within GFF4017 at 933.730 kb on - strand, within GFF4017 at 933.730 kb on - strand, within GFF4017 at 933.780 kb on + strand, within GFF4017 at 933.780 kb on + strand, within GFF4017 at 933.780 kb on + strand, within GFF4017 at 933.780 kb on + strand, within GFF4017 at 933.780 kb on + strand, within GFF4017 at 933.781 kb on - strand, within GFF4017 at 933.781 kb on - strand, within GFF4017 at 933.781 kb on - strand, within GFF4017 at 933.781 kb on - strand, within GFF4017 at 933.933 kb on + strand, within GFF4017 at 934.124 kb on + strand at 934.124 kb on + strand at 934.125 kb on - strand at 934.347 kb on + strand at 934.415 kb on + strand at 934.415 kb on + strand at 934.415 kb on + strand at 934.416 kb on - strand at 934.416 kb on - strand at 934.784 kb on + strand, within GFF4019 at 934.785 kb on - strand, within GFF4019 at 934.785 kb on - strand, within GFF4019 at 934.877 kb on + strand at 934.878 kb on - strand at 934.962 kb on + strand at 934.962 kb on + strand at 934.962 kb on + strand at 935.193 kb on + strand, within GFF4020 at 935.224 kb on + strand, within GFF4020 at 935.224 kb on + strand, within GFF4020 at 935.286 kb on + strand, within GFF4020 at 935.286 kb on + strand, within GFF4020 at 935.286 kb on + strand, within GFF4020 at 935.286 kb on + strand, within GFF4020 at 935.287 kb on - strand, within GFF4020 at 935.287 kb on - strand, within GFF4020 at 935.379 kb on + strand, within GFF4020 at 935.379 kb on + strand, within GFF4020 at 935.380 kb on - strand, within GFF4020 at 935.380 kb on - strand, within GFF4020 at 935.380 kb on - strand, within GFF4020 at 935.382 kb on + strand, within GFF4020 at 935.382 kb on + strand, within GFF4020 at 935.382 kb on + strand, within GFF4020 at 935.382 kb on + strand, within GFF4020 at 935.382 kb on + strand, within GFF4020 at 935.382 kb on + strand, within GFF4020 at 935.383 kb on - strand, within GFF4020 at 935.383 kb on - strand, within GFF4020 at 935.383 kb on - strand, within GFF4020 at 935.577 kb on + strand, within GFF4020 at 935.884 kb on - strand, within GFF4020
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 933,588 + GFF4017 0.34 +1.3 933,615 + GFF4017 0.37 -0.5 933,729 + GFF4017 0.51 +0.1 933,730 - GFF4017 0.52 +0.3 933,730 - GFF4017 0.52 -0.0 933,780 + GFF4017 0.58 +0.2 933,780 + GFF4017 0.58 +0.5 933,780 + GFF4017 0.58 +0.5 933,780 + GFF4017 0.58 -0.9 933,780 + GFF4017 0.58 +0.3 933,781 - GFF4017 0.58 +0.1 933,781 - GFF4017 0.58 +0.1 933,781 - GFF4017 0.58 +0.3 933,781 - GFF4017 0.58 -0.2 933,933 + GFF4017 0.77 -1.4 934,124 + -1.3 934,124 + -1.3 934,125 - -0.0 934,347 + +0.2 934,415 + -1.1 934,415 + -1.7 934,415 + +1.0 934,416 - +0.6 934,416 - -0.6 934,784 + GFF4019 0.78 -0.7 934,785 - GFF4019 0.78 -0.0 934,785 - GFF4019 0.78 -0.5 934,877 + +0.6 934,878 - -0.9 934,962 + -0.3 934,962 + -0.2 934,962 + +0.8 935,193 + GFF4020 0.22 -0.2 935,224 + GFF4020 0.25 +0.7 935,224 + GFF4020 0.25 +0.7 935,286 + GFF4020 0.30 -0.2 935,286 + GFF4020 0.30 +0.4 935,286 + GFF4020 0.30 +1.6 935,286 + GFF4020 0.30 +0.0 935,287 - GFF4020 0.30 +0.5 935,287 - GFF4020 0.30 +1.0 935,379 + GFF4020 0.37 -0.0 935,379 + GFF4020 0.37 +0.3 935,380 - GFF4020 0.37 +0.4 935,380 - GFF4020 0.37 +0.9 935,380 - GFF4020 0.37 -0.9 935,382 + GFF4020 0.37 -0.0 935,382 + GFF4020 0.37 +0.7 935,382 + GFF4020 0.37 +1.4 935,382 + GFF4020 0.37 -1.7 935,382 + GFF4020 0.37 -0.9 935,382 + GFF4020 0.37 -1.3 935,383 - GFF4020 0.38 +0.2 935,383 - GFF4020 0.38 +0.1 935,383 - GFF4020 0.38 +0.2 935,577 + GFF4020 0.53 +0.1 935,884 - GFF4020 0.78 -2.0
Or see this region's nucleotide sequence