Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3724

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
616,743	-		GFF3723	0.28	-1.0
616,794	-		GFF3723	0.33	-0.1
616,794	-		GFF3723	0.33	-0.6
616,794	-		GFF3723	0.33	-0.4
616,859	+		GFF3723	0.39	-0.1
616,859	+		GFF3723	0.39	-0.1
617,584	+				-0.5
617,585	-				-0.1
617,848	+		GFF3724	0.25	-1.2
617,848	+		GFF3724	0.25	+0.5
617,848	+		GFF3724	0.25	+1.6
617,849	-		GFF3724	0.25	+0.3
617,849	-		GFF3724	0.25	-0.7
617,914	+		GFF3724	0.29	-0.6
617,915	-		GFF3724	0.29	-1.7
618,109	+		GFF3724	0.41	-0.2
618,592	+		GFF3724	0.71	-0.2
618,592	+		GFF3724	0.71	-0.3
618,593	-		GFF3724	0.71	+0.6
619,094	-				-0.4
619,094	-				+0.0
619,372	+		GFF3725	0.10	-0.0