Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3485 and GFF3486 are separated by 35 nucleotides GFF3486 and GFF3487 are separated by 84 nucleotides GFF3487 and GFF3488 are separated by 156 nucleotides GFF3488 and GFF3489 are separated by 155 nucleotides
GFF3485 - Plasmid replication initiator protein, at 366,339 to 367,178
GFF3485
GFF3486 - hypothetical protein, at 367,214 to 367,522
GFF3486
GFF3487 - hypothetical protein, at 367,607 to 368,242
GFF3487
GFF3488 - hypothetical protein, at 368,399 to 368,578
GFF3488
GFF3489 - Probable lipoprotein, at 368,734 to 369,087
GFF3489
Position (kb) 367
368
369 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 366.607 kb on + strand, within GFF3485 at 366.655 kb on + strand, within GFF3485 at 366.655 kb on + strand, within GFF3485 at 366.655 kb on + strand, within GFF3485 at 366.670 kb on - strand, within GFF3485 at 367.252 kb on - strand, within GFF3486 at 367.317 kb on + strand, within GFF3486 at 367.317 kb on + strand, within GFF3486 at 367.317 kb on + strand, within GFF3486 at 367.404 kb on + strand, within GFF3486 at 367.431 kb on + strand, within GFF3486 at 367.431 kb on + strand, within GFF3486 at 367.432 kb on - strand, within GFF3486 at 367.684 kb on - strand, within GFF3487 at 367.892 kb on - strand, within GFF3487 at 368.326 kb on - strand at 368.371 kb on - strand at 368.489 kb on + strand, within GFF3488 at 368.633 kb on - strand at 368.633 kb on - strand at 368.633 kb on - strand at 368.774 kb on + strand, within GFF3489 at 368.825 kb on - strand, within GFF3489 at 369.091 kb on - strand at 369.091 kb on - strand at 369.091 kb on - strand at 369.091 kb on - strand at 369.091 kb on - strand at 369.091 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 366,607 + GFF3485 0.32 +1.7 366,655 + GFF3485 0.38 -1.6 366,655 + GFF3485 0.38 -2.4 366,655 + GFF3485 0.38 -2.4 366,670 - GFF3485 0.39 +0.1 367,252 - GFF3486 0.12 -0.6 367,317 + GFF3486 0.33 +0.3 367,317 + GFF3486 0.33 +1.1 367,317 + GFF3486 0.33 +0.3 367,404 + GFF3486 0.61 +0.5 367,431 + GFF3486 0.70 +1.1 367,431 + GFF3486 0.70 -2.0 367,432 - GFF3486 0.71 -0.6 367,684 - GFF3487 0.12 -0.4 367,892 - GFF3487 0.45 -1.6 368,326 - -1.1 368,371 - +2.1 368,489 + GFF3488 0.50 +0.2 368,633 - -0.3 368,633 - +0.1 368,633 - -0.3 368,774 + GFF3489 0.11 +0.8 368,825 - GFF3489 0.26 -0.9 369,091 - -0.9 369,091 - -0.4 369,091 - -1.7 369,091 - -3.0 369,091 - +1.0 369,091 - +0.6
Or see this region's nucleotide sequence