Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3470 and GFF3471 are separated by 27 nucleotides GFF3471 and GFF3472 overlap by 4 nucleotides GFF3472 and GFF3473 are separated by 30 nucleotides
GFF3470 - Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-), at 350,926 to 352,593
GFF3470
GFF3471 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 352,621 to 353,802
GFF3471
GFF3472 - Enoyl-CoA hydratase (EC 4.2.1.17), at 353,799 to 354,599
GFF3472
GFF3473 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 354,630 to 355,412
GFF3473
Position (kb) 352
353
354 Strain fitness (log2 ratio) -2
-1
0
1 at 351.666 kb on - strand, within GFF3470 at 351.771 kb on + strand, within GFF3470 at 351.909 kb on - strand, within GFF3470 at 352.269 kb on + strand, within GFF3470 at 352.269 kb on + strand, within GFF3470 at 352.449 kb on - strand at 352.839 kb on - strand, within GFF3471 at 352.949 kb on - strand, within GFF3471 at 353.063 kb on - strand, within GFF3471 at 353.708 kb on - strand at 354.615 kb on + strand at 354.616 kb on - strand at 354.765 kb on - strand, within GFF3473 at 354.765 kb on - strand, within GFF3473 at 354.789 kb on + strand, within GFF3473
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 351,666 - GFF3470 0.44 -0.0 351,771 + GFF3470 0.51 -0.0 351,909 - GFF3470 0.59 +0.3 352,269 + GFF3470 0.81 -2.0 352,269 + GFF3470 0.81 +0.8 352,449 - -0.2 352,839 - GFF3471 0.18 +0.1 352,949 - GFF3471 0.28 -0.5 353,063 - GFF3471 0.37 -1.4 353,708 - +0.4 354,615 + +0.5 354,616 - -0.7 354,765 - GFF3473 0.17 +0.6 354,765 - GFF3473 0.17 +1.2 354,789 + GFF3473 0.20 +0.1
Or see this region's nucleotide sequence