Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3424 and GFF3425 are separated by 121 nucleotides GFF3425 and GFF3426 overlap by 8 nucleotides GFF3426 and GFF3427 overlap by 12 nucleotides
GFF3424 - Protein sirB1, at 308,537 to 309,394
GFF3424
GFF3425 - Nucleoside-diphosphate-sugar epimerases, at 309,516 to 310,148
GFF3425
GFF3426 - hypothetical protein, at 310,141 to 310,275
GFF3426
GFF3427 - Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1), at 310,264 to 311,901
GFF3427
Position (kb) 310
311 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 309.314 kb on + strand at 309.314 kb on + strand at 309.315 kb on - strand at 309.315 kb on - strand at 309.435 kb on - strand at 309.435 kb on - strand at 309.435 kb on - strand at 309.435 kb on - strand at 309.435 kb on - strand at 309.435 kb on - strand at 309.435 kb on - strand at 309.435 kb on - strand at 309.435 kb on - strand at 309.435 kb on - strand at 309.435 kb on - strand at 309.435 kb on - strand at 309.502 kb on + strand at 309.503 kb on - strand at 309.666 kb on + strand, within GFF3425 at 309.765 kb on + strand, within GFF3425 at 309.765 kb on + strand, within GFF3425 at 309.765 kb on + strand, within GFF3425 at 309.766 kb on - strand, within GFF3425 at 309.801 kb on + strand, within GFF3425 at 309.802 kb on - strand, within GFF3425 at 309.879 kb on + strand, within GFF3425 at 309.879 kb on + strand, within GFF3425 at 309.879 kb on + strand, within GFF3425 at 309.880 kb on - strand, within GFF3425 at 310.180 kb on - strand, within GFF3426 at 310.225 kb on - strand, within GFF3426 at 310.672 kb on + strand, within GFF3427 at 310.673 kb on - strand, within GFF3427 at 310.901 kb on + strand, within GFF3427 at 310.903 kb on + strand, within GFF3427 at 310.904 kb on - strand, within GFF3427 at 310.904 kb on - strand, within GFF3427 at 310.960 kb on + strand, within GFF3427 at 310.961 kb on - strand, within GFF3427 at 310.961 kb on - strand, within GFF3427 at 310.961 kb on - strand, within GFF3427 at 311.005 kb on + strand, within GFF3427 at 311.005 kb on + strand, within GFF3427 at 311.006 kb on - strand, within GFF3427 at 311.024 kb on - strand, within GFF3427
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 309,314 + -0.2 309,314 + -0.6 309,315 - -1.6 309,315 - +0.6 309,435 - -0.5 309,435 - +0.6 309,435 - +0.6 309,435 - -1.6 309,435 - +0.4 309,435 - -1.1 309,435 - +0.2 309,435 - +0.6 309,435 - +0.3 309,435 - -0.1 309,435 - -0.3 309,435 - -1.0 309,502 + +0.9 309,503 - +1.6 309,666 + GFF3425 0.24 +0.6 309,765 + GFF3425 0.39 +0.3 309,765 + GFF3425 0.39 +0.5 309,765 + GFF3425 0.39 +1.2 309,766 - GFF3425 0.39 -0.4 309,801 + GFF3425 0.45 +1.1 309,802 - GFF3425 0.45 +2.5 309,879 + GFF3425 0.57 +0.3 309,879 + GFF3425 0.57 -0.2 309,879 + GFF3425 0.57 -0.2 309,880 - GFF3425 0.58 +0.7 310,180 - GFF3426 0.29 -1.4 310,225 - GFF3426 0.62 -0.5 310,672 + GFF3427 0.25 +0.0 310,673 - GFF3427 0.25 -3.1 310,901 + GFF3427 0.39 -0.0 310,903 + GFF3427 0.39 +0.1 310,904 - GFF3427 0.39 +0.4 310,904 - GFF3427 0.39 +0.0 310,960 + GFF3427 0.42 -0.6 310,961 - GFF3427 0.43 -1.2 310,961 - GFF3427 0.43 +0.4 310,961 - GFF3427 0.43 -1.4 311,005 + GFF3427 0.45 +0.1 311,005 + GFF3427 0.45 -0.1 311,006 - GFF3427 0.45 -0.4 311,024 - GFF3427 0.46 +0.5
Or see this region's nucleotide sequence