Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3228 and GFF3229 are separated by 198 nucleotides GFF3229 and GFF3230 are separated by 58 nucleotides GFF3230 and GFF3231 are separated by 96 nucleotides GFF3231 and GFF3232 are separated by 96 nucleotides
GFF3228 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 110,945 to 112,042
GFF3228
GFF3229 - hypothetical protein, at 112,241 to 112,762
GFF3229
GFF3230 - Chromosome (plasmid) partitioning protein ParB, at 112,821 to 114,635
GFF3230
GFF3231 - hypothetical protein, at 114,732 to 115,241
GFF3231
GFF3232 - hypothetical protein, at 115,338 to 115,796
GFF3232
Position (kb) 112
113
114
115 Strain fitness (log2 ratio) -1
0
1 at 111.959 kb on + strand at 112.123 kb on + strand at 112.132 kb on - strand at 112.230 kb on + strand at 112.505 kb on + strand, within GFF3229 at 112.532 kb on + strand, within GFF3229 at 112.532 kb on + strand, within GFF3229 at 112.586 kb on + strand, within GFF3229 at 112.805 kb on - strand at 113.046 kb on + strand, within GFF3230 at 113.046 kb on + strand, within GFF3230 at 113.046 kb on + strand, within GFF3230 at 113.116 kb on - strand, within GFF3230 at 113.694 kb on + strand, within GFF3230 at 114.312 kb on + strand, within GFF3230 at 114.494 kb on - strand at 114.674 kb on - strand at 115.324 kb on + strand at 115.324 kb on + strand at 115.377 kb on + strand at 115.377 kb on + strand at 115.437 kb on + strand, within GFF3232 at 115.438 kb on - strand, within GFF3232
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 111,959 + -0.7 112,123 + +0.7 112,132 - +0.1 112,230 + -0.4 112,505 + GFF3229 0.51 -0.3 112,532 + GFF3229 0.56 -0.4 112,532 + GFF3229 0.56 +0.3 112,586 + GFF3229 0.66 +0.1 112,805 - -0.6 113,046 + GFF3230 0.12 +1.3 113,046 + GFF3230 0.12 +1.0 113,046 + GFF3230 0.12 -0.1 113,116 - GFF3230 0.16 +0.2 113,694 + GFF3230 0.48 -0.9 114,312 + GFF3230 0.82 +0.1 114,494 - +0.4 114,674 - +0.2 115,324 + -0.9 115,324 + +1.1 115,377 + -0.5 115,377 + -0.1 115,437 + GFF3232 0.22 +0.2 115,438 - GFF3232 0.22 +0.1
Or see this region's nucleotide sequence