Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3100 and GFF3101 are separated by 99 nucleotides GFF3101 and GFF3102 are separated by 14 nucleotides GFF3102 and GFF3103 are separated by 7 nucleotides
GFF3100 - Acetyl-coenzyme A synthetase (EC 6.2.1.1), at 176,904 to 178,526
GFF3100
GFF3101 - LysR family transcriptional regulator lrhA, at 178,626 to 179,477
GFF3101
GFF3102 - Phosphoglycolate phosphatase (EC 3.1.3.18), at 179,492 to 180,229
GFF3102
GFF3103 - Extracellular ligand-binding receptor precursor, at 180,237 to 181,370
GFF3103
Position (kb) 178
179
180 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 177.626 kb on - strand, within GFF3100 at 177.814 kb on + strand, within GFF3100 at 177.814 kb on + strand, within GFF3100 at 177.815 kb on - strand, within GFF3100 at 178.186 kb on + strand, within GFF3100 at 178.474 kb on + strand at 178.474 kb on + strand at 178.474 kb on + strand at 178.475 kb on - strand at 178.608 kb on + strand at 178.609 kb on - strand at 178.833 kb on + strand, within GFF3101 at 178.833 kb on + strand, within GFF3101 at 178.834 kb on - strand, within GFF3101 at 178.834 kb on - strand, within GFF3101 at 179.196 kb on + strand, within GFF3101 at 179.196 kb on + strand, within GFF3101 at 179.197 kb on - strand, within GFF3101 at 179.197 kb on - strand, within GFF3101 at 179.197 kb on - strand, within GFF3101 at 179.256 kb on + strand, within GFF3101 at 179.406 kb on + strand at 179.406 kb on + strand at 179.407 kb on - strand at 179.488 kb on + strand at 179.790 kb on - strand, within GFF3102 at 179.801 kb on + strand, within GFF3102 at 179.801 kb on + strand, within GFF3102 at 179.801 kb on + strand, within GFF3102 at 179.802 kb on - strand, within GFF3102 at 179.802 kb on - strand, within GFF3102 at 179.802 kb on - strand, within GFF3102 at 179.834 kb on + strand, within GFF3102 at 179.858 kb on - strand, within GFF3102 at 179.858 kb on - strand, within GFF3102 at 180.131 kb on + strand, within GFF3102 at 180.131 kb on + strand, within GFF3102 at 180.131 kb on + strand, within GFF3102 at 180.132 kb on - strand, within GFF3102 at 180.132 kb on - strand, within GFF3102 at 180.132 kb on - strand, within GFF3102 at 180.137 kb on + strand, within GFF3102 at 180.137 kb on + strand, within GFF3102 at 180.241 kb on + strand at 180.242 kb on - strand at 180.242 kb on - strand at 180.242 kb on - strand at 180.242 kb on - strand at 180.430 kb on + strand, within GFF3103 at 180.430 kb on + strand, within GFF3103 at 180.430 kb on + strand, within GFF3103 at 180.430 kb on + strand, within GFF3103 at 180.430 kb on + strand, within GFF3103 at 180.430 kb on + strand, within GFF3103 at 180.431 kb on - strand, within GFF3103 at 180.431 kb on - strand, within GFF3103 at 180.431 kb on - strand, within GFF3103 at 180.431 kb on - strand, within GFF3103 at 180.431 kb on - strand, within GFF3103 at 180.431 kb on - strand, within GFF3103 at 180.431 kb on - strand, within GFF3103 at 180.431 kb on - strand, within GFF3103 at 180.431 kb on - strand, within GFF3103 at 180.431 kb on - strand, within GFF3103 at 180.454 kb on + strand, within GFF3103 at 180.454 kb on + strand, within GFF3103 at 180.454 kb on + strand, within GFF3103 at 180.454 kb on + strand, within GFF3103 at 180.454 kb on + strand, within GFF3103 at 180.454 kb on + strand, within GFF3103 at 180.454 kb on + strand, within GFF3103 at 180.455 kb on - strand, within GFF3103
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 177,626 - GFF3100 0.44 +0.2 177,814 + GFF3100 0.56 -0.8 177,814 + GFF3100 0.56 -0.9 177,815 - GFF3100 0.56 -1.7 178,186 + GFF3100 0.79 +2.6 178,474 + +0.3 178,474 + +0.5 178,474 + -0.5 178,475 - -1.1 178,608 + +0.2 178,609 - +0.0 178,833 + GFF3101 0.24 +0.0 178,833 + GFF3101 0.24 -2.0 178,834 - GFF3101 0.24 -1.4 178,834 - GFF3101 0.24 +0.6 179,196 + GFF3101 0.67 -1.0 179,196 + GFF3101 0.67 -0.7 179,197 - GFF3101 0.67 -0.8 179,197 - GFF3101 0.67 -1.2 179,197 - GFF3101 0.67 -0.9 179,256 + GFF3101 0.74 +1.0 179,406 + -0.7 179,406 + -0.1 179,407 - +1.0 179,488 + -0.5 179,790 - GFF3102 0.40 -1.5 179,801 + GFF3102 0.42 +0.5 179,801 + GFF3102 0.42 -0.2 179,801 + GFF3102 0.42 +0.1 179,802 - GFF3102 0.42 +0.5 179,802 - GFF3102 0.42 +0.1 179,802 - GFF3102 0.42 -1.2 179,834 + GFF3102 0.46 +0.9 179,858 - GFF3102 0.50 -0.1 179,858 - GFF3102 0.50 +0.2 180,131 + GFF3102 0.87 +1.3 180,131 + GFF3102 0.87 -0.1 180,131 + GFF3102 0.87 -1.7 180,132 - GFF3102 0.87 -2.0 180,132 - GFF3102 0.87 -1.9 180,132 - GFF3102 0.87 +0.8 180,137 + GFF3102 0.87 +0.6 180,137 + GFF3102 0.87 +0.5 180,241 + +0.5 180,242 - -1.4 180,242 - -1.4 180,242 - +0.5 180,242 - -0.1 180,430 + GFF3103 0.17 -2.2 180,430 + GFF3103 0.17 +0.3 180,430 + GFF3103 0.17 +0.8 180,430 + GFF3103 0.17 -0.7 180,430 + GFF3103 0.17 +0.5 180,430 + GFF3103 0.17 -0.2 180,431 - GFF3103 0.17 +0.7 180,431 - GFF3103 0.17 -0.2 180,431 - GFF3103 0.17 +0.8 180,431 - GFF3103 0.17 -0.5 180,431 - GFF3103 0.17 -0.8 180,431 - GFF3103 0.17 -0.2 180,431 - GFF3103 0.17 +0.3 180,431 - GFF3103 0.17 -0.2 180,431 - GFF3103 0.17 -0.3 180,431 - GFF3103 0.17 -0.5 180,454 + GFF3103 0.19 -2.8 180,454 + GFF3103 0.19 +1.3 180,454 + GFF3103 0.19 +0.0 180,454 + GFF3103 0.19 -0.1 180,454 + GFF3103 0.19 -0.3 180,454 + GFF3103 0.19 +1.0 180,454 + GFF3103 0.19 +1.0 180,455 - GFF3103 0.19 -0.5
Or see this region's nucleotide sequence