Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF307 and GFF308 are separated by 117 nucleotides
GFF307 - Mobile element protein, at 328,524 to 330,059
GFF307
GFF308 - hypothetical protein, at 330,177 to 330,362
GFF308
Position (kb) 330
331 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 329.386 kb on + strand, within GFF307 at 329.386 kb on + strand, within GFF307 at 329.386 kb on + strand, within GFF307 at 329.386 kb on + strand, within GFF307 at 329.386 kb on + strand, within GFF307 at 329.387 kb on - strand, within GFF307 at 329.387 kb on - strand, within GFF307 at 329.387 kb on - strand, within GFF307 at 329.406 kb on - strand, within GFF307 at 329.406 kb on - strand, within GFF307 at 329.473 kb on + strand, within GFF307 at 329.473 kb on + strand, within GFF307 at 329.473 kb on + strand, within GFF307 at 329.473 kb on + strand, within GFF307 at 329.474 kb on - strand, within GFF307 at 329.474 kb on - strand, within GFF307 at 329.605 kb on - strand, within GFF307 at 329.605 kb on - strand, within GFF307 at 329.605 kb on - strand, within GFF307 at 329.789 kb on - strand, within GFF307 at 330.111 kb on + strand at 330.111 kb on + strand at 330.111 kb on + strand at 330.111 kb on + strand at 330.127 kb on - strand at 330.145 kb on + strand at 330.146 kb on - strand at 330.219 kb on + strand, within GFF308 at 330.219 kb on + strand, within GFF308 at 330.220 kb on - strand, within GFF308 at 330.225 kb on + strand, within GFF308 at 330.225 kb on + strand, within GFF308 at 330.225 kb on + strand, within GFF308 at 330.225 kb on + strand, within GFF308 at 330.318 kb on + strand, within GFF308 at 330.352 kb on - strand at 330.360 kb on + strand at 330.361 kb on - strand at 330.364 kb on + strand at 330.365 kb on - strand at 330.403 kb on + strand at 330.403 kb on + strand at 330.403 kb on + strand at 330.404 kb on - strand at 330.404 kb on - strand at 330.404 kb on - strand at 330.444 kb on - strand at 330.523 kb on + strand at 330.523 kb on + strand at 330.524 kb on - strand at 330.524 kb on - strand at 330.545 kb on + strand at 330.705 kb on + strand at 330.705 kb on + strand at 330.706 kb on - strand at 330.839 kb on + strand at 330.839 kb on + strand at 330.840 kb on - strand at 330.840 kb on - strand at 330.840 kb on - strand at 330.840 kb on - strand at 330.840 kb on - strand at 330.884 kb on + strand at 330.884 kb on + strand at 330.885 kb on - strand at 330.885 kb on - strand at 330.935 kb on + strand at 331.025 kb on - strand at 331.088 kb on + strand at 331.088 kb on + strand at 331.088 kb on + strand at 331.088 kb on + strand at 331.088 kb on + strand at 331.088 kb on + strand at 331.089 kb on - strand at 331.089 kb on - strand at 331.089 kb on - strand at 331.089 kb on - strand at 331.103 kb on + strand at 331.103 kb on + strand at 331.202 kb on + strand at 331.210 kb on + strand at 331.250 kb on - strand at 331.337 kb on + strand at 331.337 kb on + strand at 331.337 kb on + strand at 331.338 kb on - strand at 331.338 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 329,386 + GFF307 0.56 -0.2 329,386 + GFF307 0.56 +0.3 329,386 + GFF307 0.56 +1.4 329,386 + GFF307 0.56 +1.6 329,386 + GFF307 0.56 -1.8 329,387 - GFF307 0.56 +1.2 329,387 - GFF307 0.56 +0.9 329,387 - GFF307 0.56 -0.1 329,406 - GFF307 0.57 -1.1 329,406 - GFF307 0.57 -0.8 329,473 + GFF307 0.62 +0.7 329,473 + GFF307 0.62 +0.3 329,473 + GFF307 0.62 +0.1 329,473 + GFF307 0.62 +0.8 329,474 - GFF307 0.62 -0.7 329,474 - GFF307 0.62 +0.1 329,605 - GFF307 0.70 +0.8 329,605 - GFF307 0.70 +0.5 329,605 - GFF307 0.70 +0.8 329,789 - GFF307 0.82 -0.1 330,111 + -2.3 330,111 + +1.4 330,111 + +1.2 330,111 + -0.4 330,127 - +0.8 330,145 + -2.1 330,146 - +0.8 330,219 + GFF308 0.23 -1.0 330,219 + GFF308 0.23 +2.0 330,220 - GFF308 0.23 -1.4 330,225 + GFF308 0.26 +0.9 330,225 + GFF308 0.26 +1.6 330,225 + GFF308 0.26 +0.1 330,225 + GFF308 0.26 +0.5 330,318 + GFF308 0.76 +0.4 330,352 - -0.8 330,360 + +0.5 330,361 - -1.4 330,364 + +0.6 330,365 - -1.0 330,403 + +0.3 330,403 + -3.1 330,403 + +0.7 330,404 - -2.7 330,404 - +0.9 330,404 - +1.8 330,444 - -1.7 330,523 + +0.9 330,523 + +0.4 330,524 - +0.9 330,524 - -0.3 330,545 + -0.7 330,705 + +0.6 330,705 + +0.7 330,706 - -0.5 330,839 + +0.1 330,839 + +0.8 330,840 - +1.1 330,840 - +1.8 330,840 - +0.9 330,840 - -4.0 330,840 - +0.2 330,884 + +0.4 330,884 + -1.1 330,885 - +0.1 330,885 - +0.2 330,935 + -1.2 331,025 - +0.8 331,088 + -1.2 331,088 + -1.0 331,088 + -0.6 331,088 + -1.4 331,088 + -0.7 331,088 + -0.6 331,089 - +0.0 331,089 - +1.0 331,089 - -0.2 331,089 - -0.2 331,103 + +1.3 331,103 + -0.8 331,202 + -1.8 331,210 + -0.8 331,250 - -0.9 331,337 + +1.0 331,337 + +0.2 331,337 + -0.3 331,338 - -0.9 331,338 - -0.2
Or see this region's nucleotide sequence