Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3066 and GFF3067 overlap by 4 nucleotides GFF3067 and GFF3068 are separated by 4 nucleotides GFF3068 and GFF3069 are separated by 85 nucleotides
GFF3066 - LptA, protein essential for LPS transport across the periplasm, at 146,135 to 146,608
GFF3066
GFF3067 - Lipopolysaccharide ABC transporter, ATP-binding protein LptB, at 146,605 to 147,402
GFF3067
GFF3068 - RNA polymerase sigma-54 factor RpoN, at 147,407 to 149,035
GFF3068
GFF3069 - Methyltransferase (EC 2.1.1.-), at 149,121 to 150,449
GFF3069
Position (kb) 147
148
149
150 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 147.962 kb on + strand, within GFF3068 at 147.962 kb on + strand, within GFF3068 at 147.962 kb on + strand, within GFF3068 at 147.963 kb on - strand, within GFF3068 at 147.996 kb on - strand, within GFF3068 at 147.996 kb on - strand, within GFF3068 at 147.996 kb on - strand, within GFF3068 at 148.493 kb on + strand, within GFF3068 at 148.493 kb on + strand, within GFF3068 at 148.493 kb on + strand, within GFF3068 at 148.494 kb on - strand, within GFF3068 at 148.494 kb on - strand, within GFF3068 at 148.769 kb on + strand, within GFF3068 at 148.769 kb on + strand, within GFF3068 at 148.769 kb on + strand, within GFF3068 at 148.769 kb on + strand, within GFF3068 at 148.769 kb on + strand, within GFF3068 at 148.769 kb on + strand, within GFF3068 at 148.769 kb on + strand, within GFF3068 at 148.770 kb on - strand, within GFF3068 at 148.770 kb on - strand, within GFF3068 at 148.770 kb on - strand, within GFF3068 at 148.770 kb on - strand, within GFF3068 at 148.770 kb on - strand, within GFF3068 at 148.770 kb on - strand, within GFF3068 at 148.770 kb on - strand, within GFF3068 at 148.770 kb on - strand, within GFF3068 at 148.770 kb on - strand, within GFF3068 at 148.770 kb on - strand, within GFF3068 at 148.770 kb on - strand, within GFF3068 at 148.770 kb on - strand, within GFF3068 at 148.793 kb on + strand, within GFF3068 at 148.805 kb on + strand, within GFF3068 at 148.805 kb on + strand, within GFF3068 at 148.805 kb on + strand, within GFF3068 at 148.805 kb on + strand, within GFF3068 at 148.806 kb on - strand, within GFF3068 at 148.806 kb on - strand, within GFF3068 at 148.985 kb on + strand at 148.985 kb on + strand at 148.985 kb on + strand at 148.985 kb on + strand at 148.985 kb on + strand at 149.031 kb on + strand at 149.031 kb on + strand at 149.031 kb on + strand at 149.032 kb on - strand at 149.120 kb on + strand at 149.121 kb on - strand at 149.121 kb on - strand at 149.214 kb on + strand at 149.214 kb on + strand at 149.215 kb on - strand at 149.215 kb on - strand at 149.346 kb on + strand, within GFF3069 at 149.347 kb on - strand, within GFF3069 at 149.347 kb on - strand, within GFF3069 at 149.347 kb on - strand, within GFF3069 at 149.547 kb on + strand, within GFF3069 at 149.547 kb on + strand, within GFF3069 at 149.548 kb on - strand, within GFF3069 at 149.548 kb on - strand, within GFF3069 at 149.548 kb on - strand, within GFF3069 at 149.580 kb on + strand, within GFF3069 at 149.580 kb on + strand, within GFF3069 at 149.580 kb on + strand, within GFF3069 at 149.733 kb on + strand, within GFF3069 at 149.734 kb on - strand, within GFF3069
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 147,962 + GFF3068 0.34 -0.7 147,962 + GFF3068 0.34 -1.1 147,962 + GFF3068 0.34 -0.3 147,963 - GFF3068 0.34 -1.3 147,996 - GFF3068 0.36 -0.7 147,996 - GFF3068 0.36 -0.3 147,996 - GFF3068 0.36 +0.4 148,493 + GFF3068 0.67 +0.0 148,493 + GFF3068 0.67 -2.3 148,493 + GFF3068 0.67 -1.4 148,494 - GFF3068 0.67 -1.2 148,494 - GFF3068 0.67 -2.8 148,769 + GFF3068 0.84 -0.4 148,769 + GFF3068 0.84 -1.0 148,769 + GFF3068 0.84 +1.2 148,769 + GFF3068 0.84 -2.8 148,769 + GFF3068 0.84 -1.1 148,769 + GFF3068 0.84 -1.0 148,769 + GFF3068 0.84 -1.7 148,770 - GFF3068 0.84 -0.9 148,770 - GFF3068 0.84 -0.7 148,770 - GFF3068 0.84 -0.8 148,770 - GFF3068 0.84 -0.9 148,770 - GFF3068 0.84 -1.7 148,770 - GFF3068 0.84 -1.5 148,770 - GFF3068 0.84 -0.2 148,770 - GFF3068 0.84 -0.7 148,770 - GFF3068 0.84 +0.7 148,770 - GFF3068 0.84 +0.3 148,770 - GFF3068 0.84 -1.5 148,770 - GFF3068 0.84 -0.4 148,793 + GFF3068 0.85 -0.7 148,805 + GFF3068 0.86 +0.7 148,805 + GFF3068 0.86 -0.6 148,805 + GFF3068 0.86 -1.9 148,805 + GFF3068 0.86 -3.1 148,806 - GFF3068 0.86 -0.7 148,806 - GFF3068 0.86 -0.9 148,985 + +0.2 148,985 + -0.2 148,985 + -0.5 148,985 + -1.0 148,985 + -1.1 149,031 + -0.1 149,031 + +0.9 149,031 + +0.6 149,032 - -0.7 149,120 + +0.4 149,121 - -1.7 149,121 - +2.2 149,214 + +0.3 149,214 + -1.4 149,215 - -0.1 149,215 - +0.5 149,346 + GFF3069 0.17 +0.5 149,347 - GFF3069 0.17 +0.4 149,347 - GFF3069 0.17 -0.1 149,347 - GFF3069 0.17 -0.6 149,547 + GFF3069 0.32 -1.3 149,547 + GFF3069 0.32 -0.9 149,548 - GFF3069 0.32 +0.2 149,548 - GFF3069 0.32 +0.1 149,548 - GFF3069 0.32 -0.1 149,580 + GFF3069 0.35 +0.4 149,580 + GFF3069 0.35 +1.1 149,580 + GFF3069 0.35 -0.1 149,733 + GFF3069 0.46 +0.1 149,734 - GFF3069 0.46 -0.2
Or see this region's nucleotide sequence