Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3007 and GFF3008 are separated by 17 nucleotides GFF3008 and GFF3009 are separated by 62 nucleotides GFF3009 and GFF3010 overlap by 4 nucleotides GFF3010 and GFF3011 overlap by 4 nucleotides
GFF3007 - Polysaccharide deacetylase, at 85,166 to 85,972
GFF3007
GFF3008 - FIG025233: SAM-dependent methyltransferases, at 85,990 to 86,691
GFF3008
GFF3009 - 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like, at 86,754 to 87,950
GFF3009
GFF3010 - 3-oxoacyl-[ACP] synthase, at 87,947 to 88,741
GFF3010
GFF3011 - 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60), at 88,738 to 89,184
GFF3011
Position (kb) 86
87
88 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 85.763 kb on + strand, within GFF3007 at 86.042 kb on - strand at 86.048 kb on - strand at 86.125 kb on + strand, within GFF3008 at 86.126 kb on - strand, within GFF3008 at 86.126 kb on - strand, within GFF3008 at 86.392 kb on + strand, within GFF3008 at 86.392 kb on + strand, within GFF3008 at 86.393 kb on - strand, within GFF3008 at 86.393 kb on - strand, within GFF3008 at 86.501 kb on - strand, within GFF3008 at 86.536 kb on + strand, within GFF3008 at 86.536 kb on + strand, within GFF3008 at 86.536 kb on + strand, within GFF3008 at 86.536 kb on + strand, within GFF3008 at 86.536 kb on + strand, within GFF3008 at 86.566 kb on + strand, within GFF3008 at 86.566 kb on + strand, within GFF3008 at 86.566 kb on + strand, within GFF3008 at 86.567 kb on - strand, within GFF3008 at 86.947 kb on - strand, within GFF3009 at 87.100 kb on - strand, within GFF3009 at 87.147 kb on + strand, within GFF3009 at 87.147 kb on + strand, within GFF3009 at 87.148 kb on - strand, within GFF3009 at 87.148 kb on - strand, within GFF3009 at 87.345 kb on + strand, within GFF3009 at 87.345 kb on + strand, within GFF3009 at 87.345 kb on + strand, within GFF3009 at 87.346 kb on - strand, within GFF3009 at 87.346 kb on - strand, within GFF3009 at 87.346 kb on - strand, within GFF3009 at 87.346 kb on - strand, within GFF3009 at 87.393 kb on + strand, within GFF3009 at 87.394 kb on - strand, within GFF3009 at 87.394 kb on - strand, within GFF3009 at 87.615 kb on + strand, within GFF3009 at 87.615 kb on + strand, within GFF3009 at 87.615 kb on + strand, within GFF3009 at 87.615 kb on + strand, within GFF3009 at 87.615 kb on + strand, within GFF3009 at 87.615 kb on + strand, within GFF3009 at 87.616 kb on - strand, within GFF3009 at 87.616 kb on - strand, within GFF3009 at 87.616 kb on - strand, within GFF3009 at 88.313 kb on + strand, within GFF3010 at 88.314 kb on - strand, within GFF3010 at 88.364 kb on + strand, within GFF3010 at 88.445 kb on + strand, within GFF3010 at 88.445 kb on + strand, within GFF3010 at 88.446 kb on - strand, within GFF3010 at 88.697 kb on + strand at 88.697 kb on + strand at 88.698 kb on - strand at 88.698 kb on - strand at 88.924 kb on + strand, within GFF3011
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 85,763 + GFF3007 0.74 -0.7 86,042 - -0.8 86,048 - -0.5 86,125 + GFF3008 0.19 +0.7 86,126 - GFF3008 0.19 -1.7 86,126 - GFF3008 0.19 -0.4 86,392 + GFF3008 0.57 +0.3 86,392 + GFF3008 0.57 -2.3 86,393 - GFF3008 0.57 -1.2 86,393 - GFF3008 0.57 +0.1 86,501 - GFF3008 0.73 +0.7 86,536 + GFF3008 0.78 -0.5 86,536 + GFF3008 0.78 +1.8 86,536 + GFF3008 0.78 -1.0 86,536 + GFF3008 0.78 -1.3 86,536 + GFF3008 0.78 +0.8 86,566 + GFF3008 0.82 -0.7 86,566 + GFF3008 0.82 -0.7 86,566 + GFF3008 0.82 +0.7 86,567 - GFF3008 0.82 -2.3 86,947 - GFF3009 0.16 -2.0 87,100 - GFF3009 0.29 +0.9 87,147 + GFF3009 0.33 -0.0 87,147 + GFF3009 0.33 +1.1 87,148 - GFF3009 0.33 -0.1 87,148 - GFF3009 0.33 +2.1 87,345 + GFF3009 0.49 -1.3 87,345 + GFF3009 0.49 +1.2 87,345 + GFF3009 0.49 +0.8 87,346 - GFF3009 0.49 -2.6 87,346 - GFF3009 0.49 -1.7 87,346 - GFF3009 0.49 +1.2 87,346 - GFF3009 0.49 +0.1 87,393 + GFF3009 0.53 -2.5 87,394 - GFF3009 0.53 +0.6 87,394 - GFF3009 0.53 -2.0 87,615 + GFF3009 0.72 +0.3 87,615 + GFF3009 0.72 +1.0 87,615 + GFF3009 0.72 +0.4 87,615 + GFF3009 0.72 -0.8 87,615 + GFF3009 0.72 -1.0 87,615 + GFF3009 0.72 -3.0 87,616 - GFF3009 0.72 -0.7 87,616 - GFF3009 0.72 -0.2 87,616 - GFF3009 0.72 -0.1 88,313 + GFF3010 0.46 -2.0 88,314 - GFF3010 0.46 -1.7 88,364 + GFF3010 0.52 +1.9 88,445 + GFF3010 0.63 +0.3 88,445 + GFF3010 0.63 -1.2 88,446 - GFF3010 0.63 -2.3 88,697 + +2.1 88,697 + -0.8 88,698 - -1.8 88,698 - -0.2 88,924 + GFF3011 0.42 +0.1
Or see this region's nucleotide sequence