Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2991

Experiment: Ying_Nucleobase14 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2990 and GFF2991 overlap by 4 nucleotidesGFF2991 and GFF2992 overlap by 4 nucleotides GFF2990 - chlorohydrolase family protein, at 70,005 to 71,372 GFF2990 GFF2991 - Hydantoin racemase (EC 5.1.99.-), at 71,369 to 72,115 GFF2991 GFF2992 - D-hydantoinase (EC 3.5.2.2), at 72,112 to 73,542 GFF2992 Position (kb) 71 72 73Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 70.389 kb on + strand, within GFF2990at 70.389 kb on + strand, within GFF2990at 70.389 kb on + strand, within GFF2990at 70.390 kb on - strand, within GFF2990at 70.390 kb on - strand, within GFF2990at 70.390 kb on - strand, within GFF2990at 70.390 kb on - strand, within GFF2990at 70.390 kb on - strand, within GFF2990at 70.390 kb on - strand, within GFF2990at 70.444 kb on - strand, within GFF2990at 70.444 kb on - strand, within GFF2990at 70.806 kb on + strand, within GFF2990at 70.806 kb on + strand, within GFF2990at 70.806 kb on + strand, within GFF2990at 70.806 kb on + strand, within GFF2990at 70.806 kb on + strand, within GFF2990at 70.807 kb on - strand, within GFF2990at 70.807 kb on - strand, within GFF2990at 70.807 kb on - strand, within GFF2990at 70.807 kb on - strand, within GFF2990at 70.807 kb on - strand, within GFF2990at 71.064 kb on + strand, within GFF2990at 71.099 kb on + strand, within GFF2990at 71.100 kb on - strand, within GFF2990at 71.495 kb on + strand, within GFF2991at 71.496 kb on - strand, within GFF2991at 71.496 kb on - strand, within GFF2991at 71.496 kb on - strand, within GFF2991at 71.496 kb on - strand, within GFF2991at 71.531 kb on + strand, within GFF2991at 71.531 kb on + strand, within GFF2991at 71.531 kb on + strand, within GFF2991at 71.735 kb on + strand, within GFF2991at 71.735 kb on + strand, within GFF2991at 71.736 kb on - strand, within GFF2991at 72.445 kb on + strand, within GFF2992at 72.445 kb on + strand, within GFF2992at 72.445 kb on + strand, within GFF2992at 72.446 kb on - strand, within GFF2992at 72.559 kb on + strand, within GFF2992at 72.559 kb on + strand, within GFF2992at 72.561 kb on + strand, within GFF2992at 72.561 kb on + strand, within GFF2992at 72.562 kb on - strand, within GFF2992at 72.562 kb on - strand, within GFF2992at 72.562 kb on - strand, within GFF2992at 72.562 kb on - strand, within GFF2992at 72.577 kb on + strand, within GFF2992at 72.578 kb on - strand, within GFF2992at 72.578 kb on - strand, within GFF2992at 72.919 kb on + strand, within GFF2992at 72.919 kb on + strand, within GFF2992at 72.920 kb on - strand, within GFF2992at 72.920 kb on - strand, within GFF2992at 72.961 kb on + strand, within GFF2992at 72.961 kb on + strand, within GFF2992at 72.961 kb on + strand, within GFF2992at 72.961 kb on + strand, within GFF2992at 72.961 kb on + strand, within GFF2992at 72.962 kb on - strand, within GFF2992at 72.962 kb on - strand, within GFF2992at 72.962 kb on - strand, within GFF2992at 72.962 kb on - strand, within GFF2992at 72.962 kb on - strand, within GFF2992

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1
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70,389 + GFF2990 0.28 +0.5
70,389 + GFF2990 0.28 -0.5
70,389 + GFF2990 0.28 +0.2
70,390 - GFF2990 0.28 -0.2
70,390 - GFF2990 0.28 -0.6
70,390 - GFF2990 0.28 +1.3
70,390 - GFF2990 0.28 +0.1
70,390 - GFF2990 0.28 -1.0
70,390 - GFF2990 0.28 +1.4
70,444 - GFF2990 0.32 -0.4
70,444 - GFF2990 0.32 +1.2
70,806 + GFF2990 0.59 -2.1
70,806 + GFF2990 0.59 -0.0
70,806 + GFF2990 0.59 +0.2
70,806 + GFF2990 0.59 -0.2
70,806 + GFF2990 0.59 -1.2
70,807 - GFF2990 0.59 +0.2
70,807 - GFF2990 0.59 +0.1
70,807 - GFF2990 0.59 +1.1
70,807 - GFF2990 0.59 -0.2
70,807 - GFF2990 0.59 +1.8
71,064 + GFF2990 0.77 +0.5
71,099 + GFF2990 0.80 +0.4
71,100 - GFF2990 0.80 -0.5
71,495 + GFF2991 0.17 -1.3
71,496 - GFF2991 0.17 -2.9
71,496 - GFF2991 0.17 +0.1
71,496 - GFF2991 0.17 +0.0
71,496 - GFF2991 0.17 -0.2
71,531 + GFF2991 0.22 +0.2
71,531 + GFF2991 0.22 +0.2
71,531 + GFF2991 0.22 -0.4
71,735 + GFF2991 0.49 -0.1
71,735 + GFF2991 0.49 -0.0
71,736 - GFF2991 0.49 -0.3
72,445 + GFF2992 0.23 -0.7
72,445 + GFF2992 0.23 +0.8
72,445 + GFF2992 0.23 +0.8
72,446 - GFF2992 0.23 -0.8
72,559 + GFF2992 0.31 +0.8
72,559 + GFF2992 0.31 -0.5
72,561 + GFF2992 0.31 -0.7
72,561 + GFF2992 0.31 +0.4
72,562 - GFF2992 0.31 +1.4
72,562 - GFF2992 0.31 +0.6
72,562 - GFF2992 0.31 +0.7
72,562 - GFF2992 0.31 -0.3
72,577 + GFF2992 0.32 -2.2
72,578 - GFF2992 0.33 -0.9
72,578 - GFF2992 0.33 +0.2
72,919 + GFF2992 0.56 -1.7
72,919 + GFF2992 0.56 +0.6
72,920 - GFF2992 0.56 -0.1
72,920 - GFF2992 0.56 +0.6
72,961 + GFF2992 0.59 -2.2
72,961 + GFF2992 0.59 -0.4
72,961 + GFF2992 0.59 -0.0
72,961 + GFF2992 0.59 +1.1
72,961 + GFF2992 0.59 +1.7
72,962 - GFF2992 0.59 -1.1
72,962 - GFF2992 0.59 -1.8
72,962 - GFF2992 0.59 +0.3
72,962 - GFF2992 0.59 +1.2
72,962 - GFF2992 0.59 -1.8

Or see this region's nucleotide sequence