Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2860 and GFF2861 overlap by 4 nucleotides GFF2861 and GFF2862 are separated by 46 nucleotides
GFF2860 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 448,216 to 449,082
GFF2860
GFF2861 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 449,079 to 449,900
GFF2861
GFF2862 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 449,947 to 450,948
GFF2862
Position (kb) 449
450 Strain fitness (log2 ratio) -2
-1
0
1
2 at 448.115 kb on - strand at 448.117 kb on + strand at 448.117 kb on + strand at 448.118 kb on - strand at 448.118 kb on - strand at 448.118 kb on - strand at 448.118 kb on - strand at 448.128 kb on + strand at 448.289 kb on - strand at 448.901 kb on - strand, within GFF2860 at 448.987 kb on - strand, within GFF2860 at 449.011 kb on + strand at 449.020 kb on + strand at 449.020 kb on + strand at 449.020 kb on + strand at 449.020 kb on + strand at 449.020 kb on + strand at 449.021 kb on - strand at 449.215 kb on - strand, within GFF2861 at 449.397 kb on + strand, within GFF2861 at 449.397 kb on + strand, within GFF2861 at 449.398 kb on - strand, within GFF2861 at 449.581 kb on - strand, within GFF2861 at 449.637 kb on + strand, within GFF2861 at 449.739 kb on + strand, within GFF2861 at 449.739 kb on + strand, within GFF2861 at 450.071 kb on + strand, within GFF2862 at 450.073 kb on + strand, within GFF2862 at 450.074 kb on - strand, within GFF2862 at 450.100 kb on + strand, within GFF2862 at 450.125 kb on - strand, within GFF2862 at 450.457 kb on + strand, within GFF2862 at 450.457 kb on + strand, within GFF2862 at 450.458 kb on - strand, within GFF2862 at 450.499 kb on + strand, within GFF2862 at 450.500 kb on - strand, within GFF2862 at 450.568 kb on + strand, within GFF2862 at 450.583 kb on + strand, within GFF2862 at 450.583 kb on + strand, within GFF2862 at 450.583 kb on + strand, within GFF2862 at 450.583 kb on + strand, within GFF2862 at 450.583 kb on + strand, within GFF2862 at 450.583 kb on + strand, within GFF2862 at 450.584 kb on - strand, within GFF2862 at 450.584 kb on - strand, within GFF2862 at 450.584 kb on - strand, within GFF2862 at 450.589 kb on + strand, within GFF2862 at 450.589 kb on + strand, within GFF2862 at 450.590 kb on - strand, within GFF2862 at 450.779 kb on - strand, within GFF2862
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 448,115 - -2.0 448,117 + -2.3 448,117 + +0.4 448,118 - -0.2 448,118 - +0.0 448,118 - -1.2 448,118 - -0.9 448,128 + -1.2 448,289 - +0.5 448,901 - GFF2860 0.79 -0.6 448,987 - GFF2860 0.89 -0.3 449,011 + +0.2 449,020 + +0.1 449,020 + +0.5 449,020 + +0.4 449,020 + -0.3 449,020 + -0.0 449,021 - -0.3 449,215 - GFF2861 0.17 +0.8 449,397 + GFF2861 0.39 +0.7 449,397 + GFF2861 0.39 -0.3 449,398 - GFF2861 0.39 +0.4 449,581 - GFF2861 0.61 -0.2 449,637 + GFF2861 0.68 -1.4 449,739 + GFF2861 0.80 +0.0 449,739 + GFF2861 0.80 -0.5 450,071 + GFF2862 0.12 -0.3 450,073 + GFF2862 0.13 +1.2 450,074 - GFF2862 0.13 +0.1 450,100 + GFF2862 0.15 -0.9 450,125 - GFF2862 0.18 +1.0 450,457 + GFF2862 0.51 +0.8 450,457 + GFF2862 0.51 +0.2 450,458 - GFF2862 0.51 +0.3 450,499 + GFF2862 0.55 +0.1 450,500 - GFF2862 0.55 -0.5 450,568 + GFF2862 0.62 -1.0 450,583 + GFF2862 0.63 +0.1 450,583 + GFF2862 0.63 -0.6 450,583 + GFF2862 0.63 -0.4 450,583 + GFF2862 0.63 +2.0 450,583 + GFF2862 0.63 -1.2 450,583 + GFF2862 0.63 -2.1 450,584 - GFF2862 0.64 -1.5 450,584 - GFF2862 0.64 +0.6 450,584 - GFF2862 0.64 +1.6 450,589 + GFF2862 0.64 +1.0 450,589 + GFF2862 0.64 +0.4 450,590 - GFF2862 0.64 -0.5 450,779 - GFF2862 0.83 +0.1
Or see this region's nucleotide sequence