Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2848 and GFF2849 are separated by 57 nucleotides GFF2849 and GFF2850 are separated by 87 nucleotides GFF2850 and GFF2851 are separated by 18 nucleotides
GFF2848 - hypothetical protein, at 437,810 to 437,953
GFF2848
GFF2849 - Type IV pilin PilA, at 438,011 to 438,862
GFF2849
GFF2850 - Proline sensor-regulator PrlR, at 438,950 to 439,570
GFF2850
GFF2851 - FIG00444883: hypothetical protein, at 439,589 to 440,938
GFF2851
Position (kb) 438
439
440 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 438.155 kb on + strand, within GFF2849 at 438.155 kb on + strand, within GFF2849 at 438.155 kb on + strand, within GFF2849 at 438.155 kb on + strand, within GFF2849 at 438.155 kb on + strand, within GFF2849 at 438.156 kb on - strand, within GFF2849 at 438.156 kb on - strand, within GFF2849 at 438.156 kb on - strand, within GFF2849 at 438.200 kb on + strand, within GFF2849 at 438.200 kb on + strand, within GFF2849 at 438.201 kb on - strand, within GFF2849 at 438.201 kb on - strand, within GFF2849 at 438.201 kb on - strand, within GFF2849 at 438.299 kb on + strand, within GFF2849 at 438.299 kb on + strand, within GFF2849 at 438.299 kb on + strand, within GFF2849 at 438.299 kb on + strand, within GFF2849 at 438.300 kb on - strand, within GFF2849 at 438.300 kb on - strand, within GFF2849 at 438.300 kb on - strand, within GFF2849 at 438.351 kb on - strand, within GFF2849 at 438.351 kb on - strand, within GFF2849 at 438.359 kb on + strand, within GFF2849 at 438.359 kb on + strand, within GFF2849 at 438.359 kb on + strand, within GFF2849 at 438.360 kb on - strand, within GFF2849 at 438.360 kb on - strand, within GFF2849 at 438.419 kb on + strand, within GFF2849 at 438.419 kb on + strand, within GFF2849 at 438.419 kb on + strand, within GFF2849 at 438.420 kb on - strand, within GFF2849 at 438.420 kb on - strand, within GFF2849 at 438.420 kb on - strand, within GFF2849 at 438.420 kb on - strand, within GFF2849 at 438.533 kb on + strand, within GFF2849 at 438.533 kb on + strand, within GFF2849 at 438.533 kb on + strand, within GFF2849 at 438.533 kb on + strand, within GFF2849 at 438.534 kb on - strand, within GFF2849 at 438.534 kb on - strand, within GFF2849 at 438.534 kb on - strand, within GFF2849 at 438.569 kb on + strand, within GFF2849 at 438.569 kb on + strand, within GFF2849 at 438.569 kb on + strand, within GFF2849 at 438.570 kb on - strand, within GFF2849 at 438.570 kb on - strand, within GFF2849 at 438.570 kb on - strand, within GFF2849 at 438.570 kb on - strand, within GFF2849 at 438.605 kb on + strand, within GFF2849 at 438.605 kb on + strand, within GFF2849 at 438.606 kb on - strand, within GFF2849 at 438.606 kb on - strand, within GFF2849 at 438.668 kb on + strand, within GFF2849 at 438.668 kb on + strand, within GFF2849 at 438.668 kb on + strand, within GFF2849 at 438.713 kb on + strand, within GFF2849 at 438.714 kb on - strand, within GFF2849 at 439.510 kb on - strand at 439.822 kb on - strand, within GFF2851 at 439.875 kb on + strand, within GFF2851 at 440.043 kb on + strand, within GFF2851 at 440.043 kb on + strand, within GFF2851 at 440.043 kb on + strand, within GFF2851 at 440.043 kb on + strand, within GFF2851 at 440.043 kb on + strand, within GFF2851 at 440.043 kb on + strand, within GFF2851 at 440.044 kb on - strand, within GFF2851 at 440.103 kb on + strand, within GFF2851 at 440.173 kb on - strand, within GFF2851
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 438,155 + GFF2849 0.17 -0.5 438,155 + GFF2849 0.17 -0.9 438,155 + GFF2849 0.17 +0.5 438,155 + GFF2849 0.17 +0.3 438,155 + GFF2849 0.17 -0.4 438,156 - GFF2849 0.17 -1.4 438,156 - GFF2849 0.17 -0.1 438,156 - GFF2849 0.17 +1.5 438,200 + GFF2849 0.22 +0.1 438,200 + GFF2849 0.22 +1.4 438,201 - GFF2849 0.22 +0.2 438,201 - GFF2849 0.22 -0.8 438,201 - GFF2849 0.22 -0.2 438,299 + GFF2849 0.34 +0.2 438,299 + GFF2849 0.34 -0.2 438,299 + GFF2849 0.34 -0.1 438,299 + GFF2849 0.34 +0.9 438,300 - GFF2849 0.34 +1.5 438,300 - GFF2849 0.34 -2.9 438,300 - GFF2849 0.34 +0.0 438,351 - GFF2849 0.40 +0.1 438,351 - GFF2849 0.40 +0.3 438,359 + GFF2849 0.41 -0.3 438,359 + GFF2849 0.41 +0.7 438,359 + GFF2849 0.41 -2.0 438,360 - GFF2849 0.41 +0.3 438,360 - GFF2849 0.41 +0.5 438,419 + GFF2849 0.48 -2.4 438,419 + GFF2849 0.48 -0.6 438,419 + GFF2849 0.48 +0.9 438,420 - GFF2849 0.48 -0.5 438,420 - GFF2849 0.48 +0.5 438,420 - GFF2849 0.48 +0.2 438,420 - GFF2849 0.48 -0.7 438,533 + GFF2849 0.61 -0.7 438,533 + GFF2849 0.61 -2.9 438,533 + GFF2849 0.61 -0.5 438,533 + GFF2849 0.61 +0.7 438,534 - GFF2849 0.61 +0.7 438,534 - GFF2849 0.61 -0.8 438,534 - GFF2849 0.61 +0.3 438,569 + GFF2849 0.65 -0.3 438,569 + GFF2849 0.65 +0.5 438,569 + GFF2849 0.65 -0.0 438,570 - GFF2849 0.66 +0.1 438,570 - GFF2849 0.66 +0.4 438,570 - GFF2849 0.66 +0.9 438,570 - GFF2849 0.66 -0.0 438,605 + GFF2849 0.70 +0.4 438,605 + GFF2849 0.70 -0.1 438,606 - GFF2849 0.70 +0.3 438,606 - GFF2849 0.70 +0.4 438,668 + GFF2849 0.77 -0.7 438,668 + GFF2849 0.77 +0.7 438,668 + GFF2849 0.77 -0.6 438,713 + GFF2849 0.82 +0.4 438,714 - GFF2849 0.83 +0.0 439,510 - +2.1 439,822 - GFF2851 0.17 +0.1 439,875 + GFF2851 0.21 -0.1 440,043 + GFF2851 0.34 +0.6 440,043 + GFF2851 0.34 -1.6 440,043 + GFF2851 0.34 -1.3 440,043 + GFF2851 0.34 +1.5 440,043 + GFF2851 0.34 +0.6 440,043 + GFF2851 0.34 -2.0 440,044 - GFF2851 0.34 -0.6 440,103 + GFF2851 0.38 +0.1 440,173 - GFF2851 0.43 -1.1
Or see this region's nucleotide sequence