Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2841 and GFF2842 are separated by 3 nucleotides GFF2842 and GFF2843 are separated by 14 nucleotides GFF2843 and GFF2844 are separated by 121 nucleotides
GFF2841 - Transcriptional regulator, TetR family, at 433,278 to 433,907
GFF2841
GFF2842 - Enoyl-CoA hydratase (EC 4.2.1.17), at 433,911 to 434,726
GFF2842
GFF2843 - FIG00455451: hypothetical protein, at 434,741 to 435,178
GFF2843
GFF2844 - LysR family transcriptional regulator PA2758, at 435,300 to 436,199
GFF2844
Position (kb) 434
435
436 Strain fitness (log2 ratio) -2
-1
0
1
2 at 434.109 kb on + strand, within GFF2842 at 434.109 kb on + strand, within GFF2842 at 434.109 kb on + strand, within GFF2842 at 434.109 kb on + strand, within GFF2842 at 434.109 kb on + strand, within GFF2842 at 434.109 kb on + strand, within GFF2842 at 434.326 kb on - strand, within GFF2842 at 434.326 kb on - strand, within GFF2842 at 434.338 kb on - strand, within GFF2842 at 434.592 kb on + strand, within GFF2842 at 434.593 kb on - strand, within GFF2842 at 434.593 kb on - strand, within GFF2842 at 434.820 kb on + strand, within GFF2843 at 434.820 kb on + strand, within GFF2843 at 434.820 kb on + strand, within GFF2843 at 434.820 kb on + strand, within GFF2843 at 434.820 kb on + strand, within GFF2843 at 434.820 kb on + strand, within GFF2843 at 434.821 kb on - strand, within GFF2843 at 434.821 kb on - strand, within GFF2843 at 434.821 kb on - strand, within GFF2843 at 434.821 kb on - strand, within GFF2843 at 435.015 kb on + strand, within GFF2843 at 435.015 kb on + strand, within GFF2843 at 435.015 kb on + strand, within GFF2843 at 435.015 kb on + strand, within GFF2843 at 435.015 kb on + strand, within GFF2843 at 435.015 kb on + strand, within GFF2843 at 435.015 kb on + strand, within GFF2843 at 435.015 kb on + strand, within GFF2843 at 435.016 kb on - strand, within GFF2843 at 435.016 kb on - strand, within GFF2843 at 435.016 kb on - strand, within GFF2843 at 435.016 kb on - strand, within GFF2843 at 435.016 kb on - strand, within GFF2843 at 435.016 kb on - strand, within GFF2843 at 435.138 kb on + strand at 435.138 kb on + strand at 435.138 kb on + strand at 435.139 kb on - strand at 435.139 kb on - strand at 435.150 kb on + strand at 435.150 kb on + strand at 435.150 kb on + strand at 435.150 kb on + strand at 435.150 kb on + strand at 435.150 kb on + strand at 435.150 kb on + strand at 435.150 kb on + strand at 435.150 kb on + strand at 435.151 kb on - strand at 435.151 kb on - strand at 435.238 kb on + strand at 435.238 kb on + strand at 435.239 kb on - strand at 435.239 kb on - strand at 435.239 kb on - strand at 435.239 kb on - strand at 435.239 kb on - strand at 435.239 kb on - strand at 436.011 kb on + strand, within GFF2844 at 436.011 kb on + strand, within GFF2844
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 434,109 + GFF2842 0.24 -0.3 434,109 + GFF2842 0.24 +0.2 434,109 + GFF2842 0.24 -1.5 434,109 + GFF2842 0.24 -0.6 434,109 + GFF2842 0.24 +0.7 434,109 + GFF2842 0.24 -1.4 434,326 - GFF2842 0.51 +0.4 434,326 - GFF2842 0.51 -1.2 434,338 - GFF2842 0.52 +0.1 434,592 + GFF2842 0.83 -0.6 434,593 - GFF2842 0.84 -0.5 434,593 - GFF2842 0.84 +0.5 434,820 + GFF2843 0.18 -2.1 434,820 + GFF2843 0.18 +0.2 434,820 + GFF2843 0.18 +2.1 434,820 + GFF2843 0.18 +0.5 434,820 + GFF2843 0.18 -1.7 434,820 + GFF2843 0.18 -2.3 434,821 - GFF2843 0.18 -0.2 434,821 - GFF2843 0.18 -1.1 434,821 - GFF2843 0.18 -0.4 434,821 - GFF2843 0.18 -0.1 435,015 + GFF2843 0.63 +0.0 435,015 + GFF2843 0.63 +1.6 435,015 + GFF2843 0.63 +1.1 435,015 + GFF2843 0.63 -0.9 435,015 + GFF2843 0.63 -0.4 435,015 + GFF2843 0.63 -0.6 435,015 + GFF2843 0.63 +0.4 435,015 + GFF2843 0.63 +1.4 435,016 - GFF2843 0.63 +0.7 435,016 - GFF2843 0.63 +0.0 435,016 - GFF2843 0.63 +0.3 435,016 - GFF2843 0.63 +0.4 435,016 - GFF2843 0.63 +0.4 435,016 - GFF2843 0.63 -0.2 435,138 + -1.1 435,138 + +1.5 435,138 + +0.4 435,139 - -1.0 435,139 - +0.6 435,150 + -0.1 435,150 + +0.0 435,150 + +0.6 435,150 + -0.4 435,150 + -0.5 435,150 + +0.5 435,150 + -1.7 435,150 + +1.4 435,150 + -0.1 435,151 - +0.3 435,151 - +1.1 435,238 + +0.7 435,238 + +0.2 435,239 - +0.5 435,239 - +1.3 435,239 - +0.4 435,239 - +0.2 435,239 - +0.2 435,239 - +0.5 436,011 + GFF2844 0.79 -0.7 436,011 + GFF2844 0.79 -0.0
Or see this region's nucleotide sequence