Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2814 and GFF2815 are separated by 69 nucleotides GFF2815 and GFF2816 are separated by 175 nucleotides GFF2816 and GFF2817 are separated by 9 nucleotides GFF2817 and GFF2818 overlap by 4 nucleotides
GFF2814 - Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3), at 412,400 to 414,133
GFF2814
GFF2815 - Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3), at 414,203 to 415,798
GFF2815
GFF2816 - LSU ribosomal protein L14p (L23e), at 415,974 to 416,342
GFF2816
GFF2817 - LSU ribosomal protein L24p (L26e), at 416,352 to 416,672
GFF2817
GFF2818 - LSU ribosomal protein L5p (L11e), at 416,669 to 417,214
GFF2818
Position (kb) 414
415
416 Strain fitness (log2 ratio) -2
-1
0
1
2 at 413.333 kb on + strand, within GFF2814 at 413.348 kb on + strand, within GFF2814 at 413.348 kb on + strand, within GFF2814 at 413.349 kb on - strand, within GFF2814 at 413.369 kb on + strand, within GFF2814 at 413.369 kb on + strand, within GFF2814 at 413.456 kb on + strand, within GFF2814 at 413.457 kb on - strand, within GFF2814 at 413.457 kb on - strand, within GFF2814 at 413.457 kb on - strand, within GFF2814 at 413.556 kb on - strand, within GFF2814 at 413.652 kb on - strand, within GFF2814 at 413.786 kb on + strand, within GFF2814 at 413.787 kb on - strand, within GFF2814 at 414.020 kb on + strand at 414.020 kb on + strand at 414.021 kb on - strand at 414.021 kb on - strand at 414.089 kb on + strand at 414.089 kb on + strand at 414.089 kb on + strand at 414.153 kb on + strand at 414.154 kb on - strand at 414.154 kb on - strand at 414.154 kb on - strand at 414.154 kb on - strand at 414.248 kb on + strand at 414.672 kb on - strand, within GFF2815 at 415.349 kb on + strand, within GFF2815 at 415.350 kb on - strand, within GFF2815 at 415.350 kb on - strand, within GFF2815 at 415.503 kb on + strand, within GFF2815 at 415.503 kb on + strand, within GFF2815 at 415.503 kb on + strand, within GFF2815 at 415.503 kb on + strand, within GFF2815 at 415.504 kb on - strand, within GFF2815 at 415.769 kb on + strand at 415.769 kb on + strand at 415.769 kb on + strand at 415.770 kb on - strand at 415.854 kb on + strand at 415.854 kb on + strand at 415.854 kb on + strand at 415.854 kb on + strand at 415.855 kb on - strand at 415.966 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 413,333 + GFF2814 0.54 -1.1 413,348 + GFF2814 0.55 +2.0 413,348 + GFF2814 0.55 +0.9 413,349 - GFF2814 0.55 -0.3 413,369 + GFF2814 0.56 +0.5 413,369 + GFF2814 0.56 -1.2 413,456 + GFF2814 0.61 +0.5 413,457 - GFF2814 0.61 -0.5 413,457 - GFF2814 0.61 +0.5 413,457 - GFF2814 0.61 -0.6 413,556 - GFF2814 0.67 +0.7 413,652 - GFF2814 0.72 +0.1 413,786 + GFF2814 0.80 +0.0 413,787 - GFF2814 0.80 +0.4 414,020 + +0.8 414,020 + -1.0 414,021 - +1.1 414,021 - -0.4 414,089 + +0.6 414,089 + -0.3 414,089 + -0.6 414,153 + -0.6 414,154 - +0.1 414,154 - -2.1 414,154 - +1.7 414,154 - +0.6 414,248 + +1.0 414,672 - GFF2815 0.29 +0.1 415,349 + GFF2815 0.72 +1.4 415,350 - GFF2815 0.72 -1.7 415,350 - GFF2815 0.72 +1.0 415,503 + GFF2815 0.81 -1.9 415,503 + GFF2815 0.81 +1.5 415,503 + GFF2815 0.81 -0.5 415,503 + GFF2815 0.81 -0.4 415,504 - GFF2815 0.82 +0.2 415,769 + +1.3 415,769 + +0.9 415,769 + +1.6 415,770 - -0.1 415,854 + +0.0 415,854 + -0.3 415,854 + +0.1 415,854 + -0.6 415,855 - -2.0 415,966 + +0.3
Or see this region's nucleotide sequence