Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2624 and GFF2625 are separated by 109 nucleotides GFF2625 and GFF2626 overlap by 4 nucleotides
GFF2624 - Putative branched-chain amino acid transporter substrate-binding protein, at 216,688 to 217,884
GFF2624
GFF2625 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 217,994 to 218,896
GFF2625
GFF2626 - Nucleoside ABC transporter, permease protein 1, at 218,893 to 219,921
GFF2626
Position (kb) 217
218
219 Strain fitness (log2 ratio) -2
-1
0
1 at 217.132 kb on + strand, within GFF2624 at 217.132 kb on + strand, within GFF2624 at 217.225 kb on + strand, within GFF2624 at 217.225 kb on + strand, within GFF2624 at 217.226 kb on - strand, within GFF2624 at 217.396 kb on + strand, within GFF2624 at 217.396 kb on + strand, within GFF2624 at 217.462 kb on + strand, within GFF2624 at 217.462 kb on + strand, within GFF2624 at 217.463 kb on - strand, within GFF2624 at 217.463 kb on - strand, within GFF2624 at 217.463 kb on - strand, within GFF2624 at 217.492 kb on + strand, within GFF2624 at 217.579 kb on + strand, within GFF2624 at 217.580 kb on - strand, within GFF2624 at 217.993 kb on + strand at 217.993 kb on + strand at 217.994 kb on - strand at 217.994 kb on - strand at 218.013 kb on + strand at 218.014 kb on - strand at 218.051 kb on + strand at 218.351 kb on + strand, within GFF2625 at 218.352 kb on - strand, within GFF2625 at 218.654 kb on + strand, within GFF2625 at 218.655 kb on - strand, within GFF2625 at 218.655 kb on - strand, within GFF2625 at 218.655 kb on - strand, within GFF2625 at 218.685 kb on - strand, within GFF2625 at 218.826 kb on - strand at 218.826 kb on - strand at 219.016 kb on + strand, within GFF2626 at 219.017 kb on - strand, within GFF2626 at 219.017 kb on - strand, within GFF2626 at 219.017 kb on - strand, within GFF2626 at 219.065 kb on - strand, within GFF2626 at 219.067 kb on - strand, within GFF2626 at 219.107 kb on - strand, within GFF2626 at 219.227 kb on - strand, within GFF2626 at 219.280 kb on + strand, within GFF2626 at 219.349 kb on + strand, within GFF2626 at 219.350 kb on - strand, within GFF2626 at 219.350 kb on - strand, within GFF2626 at 219.562 kb on + strand, within GFF2626 at 219.562 kb on + strand, within GFF2626 at 219.562 kb on + strand, within GFF2626 at 219.563 kb on - strand, within GFF2626 at 219.718 kb on + strand, within GFF2626 at 219.718 kb on + strand, within GFF2626 at 219.719 kb on - strand, within GFF2626 at 219.760 kb on + strand, within GFF2626 at 219.761 kb on - strand, within GFF2626
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 217,132 + GFF2624 0.37 -0.1 217,132 + GFF2624 0.37 -1.7 217,225 + GFF2624 0.45 -1.5 217,225 + GFF2624 0.45 +0.2 217,226 - GFF2624 0.45 +0.2 217,396 + GFF2624 0.59 +0.2 217,396 + GFF2624 0.59 +0.4 217,462 + GFF2624 0.65 -1.4 217,462 + GFF2624 0.65 -1.4 217,463 - GFF2624 0.65 -1.3 217,463 - GFF2624 0.65 -0.0 217,463 - GFF2624 0.65 +0.3 217,492 + GFF2624 0.67 +0.4 217,579 + GFF2624 0.74 -1.4 217,580 - GFF2624 0.75 -1.7 217,993 + +0.8 217,993 + -1.2 217,994 - +0.5 217,994 - +1.5 218,013 + +0.6 218,014 - -0.2 218,051 + +0.0 218,351 + GFF2625 0.40 -2.1 218,352 - GFF2625 0.40 -0.7 218,654 + GFF2625 0.73 +0.5 218,655 - GFF2625 0.73 +0.2 218,655 - GFF2625 0.73 +0.6 218,655 - GFF2625 0.73 +0.4 218,685 - GFF2625 0.77 +0.9 218,826 - +1.0 218,826 - +0.5 219,016 + GFF2626 0.12 -1.1 219,017 - GFF2626 0.12 +0.8 219,017 - GFF2626 0.12 -1.0 219,017 - GFF2626 0.12 +0.3 219,065 - GFF2626 0.17 +0.5 219,067 - GFF2626 0.17 +0.2 219,107 - GFF2626 0.21 +0.5 219,227 - GFF2626 0.32 -0.6 219,280 + GFF2626 0.38 -0.4 219,349 + GFF2626 0.44 -0.4 219,350 - GFF2626 0.44 +1.2 219,350 - GFF2626 0.44 +0.5 219,562 + GFF2626 0.65 +0.7 219,562 + GFF2626 0.65 +0.7 219,562 + GFF2626 0.65 +1.0 219,563 - GFF2626 0.65 +0.6 219,718 + GFF2626 0.80 -0.6 219,718 + GFF2626 0.80 +0.4 219,719 - GFF2626 0.80 +0.6 219,760 + GFF2626 0.84 +0.3 219,761 - GFF2626 0.84 -0.4
Or see this region's nucleotide sequence