Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2511

Experiment: Ying_Nucleobase14 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2509 and GFF2510 are separated by 189 nucleotidesGFF2510 and GFF2511 are separated by 63 nucleotidesGFF2511 and GFF2512 are separated by 57 nucleotides GFF2509 - CAMP phosphodiesterases class-II:Metallo-beta-lactamase superfamily, at 95,252 to 96,118 GFF2509 GFF2510 - Type IV pilin PilA, at 96,308 to 96,850 GFF2510 GFF2511 - Molybdenum cofactor biosynthesis protein MoaC, at 96,914 to 97,408 GFF2511 GFF2512 - Exported zinc metalloprotease YfgC precursor, at 97,466 to 99,157 GFF2512 Position (kb) 96 97 98Strain fitness (log2 ratio) -3 -2 -1 0 1at 95.981 kb on + strand, within GFF2509at 95.981 kb on + strand, within GFF2509at 95.981 kb on + strand, within GFF2509at 95.981 kb on + strand, within GFF2509at 95.981 kb on + strand, within GFF2509at 95.981 kb on + strand, within GFF2509at 95.981 kb on + strand, within GFF2509at 95.982 kb on - strand, within GFF2509at 95.982 kb on - strand, within GFF2509at 95.982 kb on - strand, within GFF2509at 95.982 kb on - strand, within GFF2509at 95.982 kb on - strand, within GFF2509at 95.982 kb on - strand, within GFF2509at 95.982 kb on - strand, within GFF2509at 95.982 kb on - strand, within GFF2509at 95.982 kb on - strand, within GFF2509at 96.223 kb on + strandat 96.223 kb on + strandat 96.224 kb on - strandat 96.224 kb on - strandat 96.224 kb on - strandat 96.224 kb on - strandat 96.262 kb on + strandat 96.262 kb on + strandat 96.262 kb on + strandat 96.263 kb on - strandat 96.276 kb on + strandat 96.379 kb on + strand, within GFF2510at 96.379 kb on + strand, within GFF2510at 96.407 kb on + strand, within GFF2510at 96.407 kb on + strand, within GFF2510at 96.408 kb on - strand, within GFF2510at 96.408 kb on - strand, within GFF2510at 96.416 kb on + strand, within GFF2510at 96.416 kb on + strand, within GFF2510at 96.416 kb on + strand, within GFF2510at 96.416 kb on + strand, within GFF2510at 96.417 kb on - strand, within GFF2510at 96.417 kb on - strand, within GFF2510at 96.417 kb on - strand, within GFF2510at 96.417 kb on - strand, within GFF2510at 96.417 kb on - strand, within GFF2510at 96.417 kb on - strand, within GFF2510at 96.417 kb on - strand, within GFF2510at 96.417 kb on - strand, within GFF2510at 96.417 kb on - strand, within GFF2510at 96.417 kb on - strand, within GFF2510at 96.658 kb on + strand, within GFF2510at 96.658 kb on + strand, within GFF2510at 96.659 kb on - strand, within GFF2510at 96.725 kb on + strand, within GFF2510at 96.726 kb on - strand, within GFF2510at 96.726 kb on - strand, within GFF2510at 96.726 kb on - strand, within GFF2510at 96.726 kb on - strand, within GFF2510at 96.726 kb on - strand, within GFF2510at 96.827 kb on + strandat 96.827 kb on + strandat 96.828 kb on - strandat 96.828 kb on - strandat 96.828 kb on - strandat 96.828 kb on - strandat 96.828 kb on - strandat 96.828 kb on - strandat 96.828 kb on - strandat 96.828 kb on - strandat 96.828 kb on - strandat 96.828 kb on - strandat 96.848 kb on + strandat 96.848 kb on + strandat 96.848 kb on + strandat 96.849 kb on - strandat 96.860 kb on + strandat 96.860 kb on + strandat 96.861 kb on - strandat 97.011 kb on + strand, within GFF2511at 97.011 kb on + strand, within GFF2511at 97.011 kb on + strand, within GFF2511at 97.012 kb on - strand, within GFF2511at 97.012 kb on - strand, within GFF2511at 97.399 kb on + strandat 97.400 kb on - strandat 97.430 kb on + strandat 97.430 kb on + strandat 97.431 kb on - strandat 97.431 kb on - strandat 97.431 kb on - strandat 97.431 kb on - strandat 97.459 kb on + strandat 97.459 kb on + strandat 97.459 kb on + strandat 97.459 kb on + strandat 97.460 kb on - strandat 97.460 kb on - strandat 97.685 kb on + strand, within GFF2512at 97.685 kb on + strand, within GFF2512at 97.686 kb on - strand, within GFF2512at 97.686 kb on - strand, within GFF2512at 97.686 kb on - strand, within GFF2512at 97.686 kb on - strand, within GFF2512at 97.700 kb on + strand, within GFF2512at 97.727 kb on + strand, within GFF2512at 98.114 kb on - strand, within GFF2512at 98.256 kb on - strand, within GFF2512at 98.256 kb on - strand, within GFF2512

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1
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95,981 + GFF2509 0.84 +0.5
95,981 + GFF2509 0.84 +0.5
95,981 + GFF2509 0.84 +0.3
95,981 + GFF2509 0.84 +0.2
95,981 + GFF2509 0.84 -2.3
95,981 + GFF2509 0.84 -0.7
95,981 + GFF2509 0.84 -0.0
95,982 - GFF2509 0.84 -0.4
95,982 - GFF2509 0.84 -0.3
95,982 - GFF2509 0.84 +0.2
95,982 - GFF2509 0.84 -2.0
95,982 - GFF2509 0.84 +0.4
95,982 - GFF2509 0.84 -1.1
95,982 - GFF2509 0.84 +0.5
95,982 - GFF2509 0.84 -1.7
95,982 - GFF2509 0.84 +1.3
96,223 + -1.4
96,223 + -0.9
96,224 - -1.4
96,224 - -0.4
96,224 - -1.1
96,224 - -0.5
96,262 + +0.4
96,262 + +1.1
96,262 + -0.9
96,263 - -1.5
96,276 + +0.9
96,379 + GFF2510 0.13 +0.1
96,379 + GFF2510 0.13 -2.2
96,407 + GFF2510 0.18 -0.2
96,407 + GFF2510 0.18 -0.2
96,408 - GFF2510 0.18 +1.5
96,408 - GFF2510 0.18 -1.6
96,416 + GFF2510 0.20 -0.1
96,416 + GFF2510 0.20 +0.9
96,416 + GFF2510 0.20 +0.4
96,416 + GFF2510 0.20 +0.5
96,417 - GFF2510 0.20 -0.4
96,417 - GFF2510 0.20 +0.2
96,417 - GFF2510 0.20 +0.4
96,417 - GFF2510 0.20 -0.4
96,417 - GFF2510 0.20 -0.5
96,417 - GFF2510 0.20 -1.3
96,417 - GFF2510 0.20 -0.6
96,417 - GFF2510 0.20 +0.3
96,417 - GFF2510 0.20 +0.8
96,417 - GFF2510 0.20 -0.3
96,658 + GFF2510 0.64 +1.7
96,658 + GFF2510 0.64 -0.6
96,659 - GFF2510 0.65 -0.3
96,725 + GFF2510 0.77 -1.3
96,726 - GFF2510 0.77 -1.8
96,726 - GFF2510 0.77 -0.7
96,726 - GFF2510 0.77 -0.3
96,726 - GFF2510 0.77 -1.1
96,726 - GFF2510 0.77 -0.5
96,827 + +0.8
96,827 + +0.0
96,828 - +1.4
96,828 - +0.1
96,828 - -0.3
96,828 - -2.9
96,828 - -0.5
96,828 - +0.1
96,828 - +0.5
96,828 - +0.4
96,828 - -0.9
96,828 - +0.5
96,848 + +0.4
96,848 + -0.7
96,848 + -0.4
96,849 - +0.6
96,860 + +0.4
96,860 + -0.1
96,861 - +0.2
97,011 + GFF2511 0.20 -2.8
97,011 + GFF2511 0.20 -1.5
97,011 + GFF2511 0.20 -1.0
97,012 - GFF2511 0.20 -2.2
97,012 - GFF2511 0.20 -0.9
97,399 + -1.3
97,400 - -1.1
97,430 + -0.2
97,430 + +0.5
97,431 - -0.9
97,431 - -0.5
97,431 - +0.2
97,431 - -1.1
97,459 + +0.7
97,459 + +0.7
97,459 + -0.4
97,459 + -0.1
97,460 - -0.3
97,460 - +0.7
97,685 + GFF2512 0.13 -1.4
97,685 + GFF2512 0.13 -2.1
97,686 - GFF2512 0.13 -1.1
97,686 - GFF2512 0.13 +0.2
97,686 - GFF2512 0.13 -0.5
97,686 - GFF2512 0.13 -3.5
97,700 + GFF2512 0.14 -0.6
97,727 + GFF2512 0.15 -1.1
98,114 - GFF2512 0.38 -0.8
98,256 - GFF2512 0.47 +0.7
98,256 - GFF2512 0.47 -1.8

Or see this region's nucleotide sequence