Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF250 and GFF251 are separated by 204 nucleotides GFF251 and GFF252 are separated by 65 nucleotides
GFF250 - Predicted hydroxymethylpyrimidine transporter CytX, at 266,405 to 267,712
GFF250
GFF251 - hypothetical protein, at 267,917 to 268,714
GFF251
GFF252 - Sulfide dehydrogenase [flavocytochrome C] flavoprotein chain precursor (EC 1.8.2.-), at 268,780 to 270,057
GFF252
Position (kb) 267
268
269 Strain fitness (log2 ratio) -2
-1
0
1
2 at 266.928 kb on + strand, within GFF250 at 266.928 kb on + strand, within GFF250 at 266.929 kb on - strand, within GFF250 at 266.952 kb on + strand, within GFF250 at 267.435 kb on + strand, within GFF250 at 267.436 kb on - strand, within GFF250 at 267.436 kb on - strand, within GFF250 at 267.436 kb on - strand, within GFF250 at 267.576 kb on + strand, within GFF250 at 267.810 kb on + strand at 267.811 kb on - strand at 267.811 kb on - strand at 267.811 kb on - strand at 267.909 kb on + strand at 267.910 kb on - strand at 267.911 kb on + strand at 268.041 kb on + strand, within GFF251 at 268.041 kb on + strand, within GFF251 at 268.041 kb on + strand, within GFF251 at 268.041 kb on + strand, within GFF251 at 268.041 kb on + strand, within GFF251 at 268.041 kb on + strand, within GFF251 at 268.042 kb on - strand, within GFF251 at 268.042 kb on - strand, within GFF251 at 268.042 kb on - strand, within GFF251 at 268.042 kb on - strand, within GFF251 at 268.162 kb on - strand, within GFF251 at 268.317 kb on + strand, within GFF251 at 268.317 kb on + strand, within GFF251 at 268.318 kb on - strand, within GFF251 at 268.318 kb on - strand, within GFF251 at 268.318 kb on - strand, within GFF251 at 268.318 kb on - strand, within GFF251 at 268.509 kb on + strand, within GFF251 at 268.587 kb on + strand, within GFF251 at 268.588 kb on - strand, within GFF251 at 268.588 kb on - strand, within GFF251 at 268.827 kb on - strand at 268.827 kb on - strand at 268.908 kb on - strand, within GFF252 at 268.908 kb on - strand, within GFF252 at 268.958 kb on + strand, within GFF252 at 268.958 kb on + strand, within GFF252 at 268.959 kb on - strand, within GFF252 at 268.959 kb on - strand, within GFF252 at 268.973 kb on + strand, within GFF252 at 268.973 kb on + strand, within GFF252 at 269.336 kb on + strand, within GFF252 at 269.336 kb on + strand, within GFF252 at 269.337 kb on - strand, within GFF252 at 269.337 kb on - strand, within GFF252 at 269.337 kb on - strand, within GFF252 at 269.337 kb on - strand, within GFF252 at 269.337 kb on - strand, within GFF252 at 269.337 kb on - strand, within GFF252 at 269.337 kb on - strand, within GFF252 at 269.337 kb on - strand, within GFF252 at 269.438 kb on + strand, within GFF252 at 269.438 kb on + strand, within GFF252 at 269.438 kb on + strand, within GFF252 at 269.438 kb on + strand, within GFF252 at 269.438 kb on + strand, within GFF252 at 269.438 kb on + strand, within GFF252 at 269.438 kb on + strand, within GFF252 at 269.439 kb on - strand, within GFF252 at 269.439 kb on - strand, within GFF252 at 269.439 kb on - strand, within GFF252 at 269.487 kb on - strand, within GFF252 at 269.513 kb on + strand, within GFF252 at 269.513 kb on + strand, within GFF252 at 269.514 kb on - strand, within GFF252 at 269.514 kb on - strand, within GFF252 at 269.514 kb on - strand, within GFF252
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 266,928 + GFF250 0.40 -1.2 266,928 + GFF250 0.40 -0.4 266,929 - GFF250 0.40 -0.9 266,952 + GFF250 0.42 +0.7 267,435 + GFF250 0.79 -0.3 267,436 - GFF250 0.79 +1.1 267,436 - GFF250 0.79 -0.9 267,436 - GFF250 0.79 -1.5 267,576 + GFF250 0.90 -1.3 267,810 + +0.3 267,811 - +0.7 267,811 - -0.3 267,811 - +0.7 267,909 + -1.1 267,910 - -1.5 267,911 + +0.7 268,041 + GFF251 0.16 +0.3 268,041 + GFF251 0.16 +0.2 268,041 + GFF251 0.16 -0.1 268,041 + GFF251 0.16 -0.8 268,041 + GFF251 0.16 -0.8 268,041 + GFF251 0.16 +0.2 268,042 - GFF251 0.16 -0.3 268,042 - GFF251 0.16 +0.1 268,042 - GFF251 0.16 +1.0 268,042 - GFF251 0.16 -1.4 268,162 - GFF251 0.31 +0.4 268,317 + GFF251 0.50 +0.5 268,317 + GFF251 0.50 +0.1 268,318 - GFF251 0.50 -1.4 268,318 - GFF251 0.50 +0.7 268,318 - GFF251 0.50 +0.6 268,318 - GFF251 0.50 +0.5 268,509 + GFF251 0.74 +0.4 268,587 + GFF251 0.84 +1.3 268,588 - GFF251 0.84 +0.1 268,588 - GFF251 0.84 +1.8 268,827 - +0.3 268,827 - +0.2 268,908 - GFF252 0.10 +0.3 268,908 - GFF252 0.10 +0.4 268,958 + GFF252 0.14 +0.2 268,958 + GFF252 0.14 +0.3 268,959 - GFF252 0.14 -0.1 268,959 - GFF252 0.14 +1.1 268,973 + GFF252 0.15 +0.3 268,973 + GFF252 0.15 -1.7 269,336 + GFF252 0.44 -1.7 269,336 + GFF252 0.44 +0.6 269,337 - GFF252 0.44 -1.8 269,337 - GFF252 0.44 -1.2 269,337 - GFF252 0.44 +0.4 269,337 - GFF252 0.44 +0.4 269,337 - GFF252 0.44 +0.5 269,337 - GFF252 0.44 +0.3 269,337 - GFF252 0.44 -0.2 269,337 - GFF252 0.44 +1.2 269,438 + GFF252 0.51 -1.2 269,438 + GFF252 0.51 +0.1 269,438 + GFF252 0.51 -2.3 269,438 + GFF252 0.51 +0.3 269,438 + GFF252 0.51 +0.4 269,438 + GFF252 0.51 +0.7 269,438 + GFF252 0.51 -0.5 269,439 - GFF252 0.52 -0.2 269,439 - GFF252 0.52 +0.8 269,439 - GFF252 0.52 +0.0 269,487 - GFF252 0.55 -1.1 269,513 + GFF252 0.57 -0.4 269,513 + GFF252 0.57 +0.1 269,514 - GFF252 0.57 +0.2 269,514 - GFF252 0.57 -0.4 269,514 - GFF252 0.57 +0.9
Or see this region's nucleotide sequence