Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF241 and GFF242 are separated by 239 nucleotides GFF242 and GFF243 are separated by 9 nucleotides GFF243 and GFF244 are separated by 65 nucleotides GFF244 and GFF245 are separated by 0 nucleotides
GFF241 - hypothetical protein, at 260,286 to 260,513
GFF241
GFF242 - hypothetical protein, at 260,753 to 261,145
GFF242
GFF243 - Putative exported protein, at 261,155 to 261,748
GFF243
GFF244 - MOSC domain protein, at 261,814 to 262,395
GFF244
GFF245 - Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3), at 262,396 to 263,316
GFF245
Position (kb) 261
262 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 260.285 kb on + strand at 260.285 kb on + strand at 260.285 kb on + strand at 260.286 kb on - strand at 260.286 kb on - strand at 260.493 kb on + strand at 260.494 kb on - strand at 260.494 kb on - strand at 261.246 kb on + strand, within GFF243 at 261.247 kb on - strand, within GFF243 at 261.247 kb on - strand, within GFF243 at 261.247 kb on - strand, within GFF243 at 261.247 kb on - strand, within GFF243 at 261.513 kb on + strand, within GFF243 at 261.514 kb on - strand, within GFF243 at 261.514 kb on - strand, within GFF243 at 261.546 kb on + strand, within GFF243 at 261.546 kb on + strand, within GFF243 at 261.546 kb on + strand, within GFF243 at 261.547 kb on - strand, within GFF243 at 261.547 kb on - strand, within GFF243 at 261.547 kb on - strand, within GFF243 at 261.573 kb on + strand, within GFF243 at 261.574 kb on - strand, within GFF243 at 261.627 kb on + strand, within GFF243 at 261.627 kb on + strand, within GFF243 at 262.652 kb on + strand, within GFF245 at 262.653 kb on - strand, within GFF245 at 262.653 kb on - strand, within GFF245
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 260,285 + +0.0 260,285 + +0.1 260,285 + +0.3 260,286 - +0.4 260,286 - +0.9 260,493 + +1.8 260,494 - -0.1 260,494 - -0.9 261,246 + GFF243 0.15 -1.4 261,247 - GFF243 0.15 +0.2 261,247 - GFF243 0.15 -0.5 261,247 - GFF243 0.15 -0.9 261,247 - GFF243 0.15 -0.0 261,513 + GFF243 0.60 -0.3 261,514 - GFF243 0.60 -1.9 261,514 - GFF243 0.60 -0.1 261,546 + GFF243 0.66 +0.3 261,546 + GFF243 0.66 -1.4 261,546 + GFF243 0.66 -0.0 261,547 - GFF243 0.66 +0.2 261,547 - GFF243 0.66 -0.5 261,547 - GFF243 0.66 -0.8 261,573 + GFF243 0.70 -1.5 261,574 - GFF243 0.71 -0.3 261,627 + GFF243 0.79 +0.1 261,627 + GFF243 0.79 +0.4 262,652 + GFF245 0.28 -2.4 262,653 - GFF245 0.28 -2.9 262,653 - GFF245 0.28 -1.9
Or see this region's nucleotide sequence