Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2396

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
39,459	+				-0.1
39,621	+				-1.0
39,621	+				+0.3
39,622	-				-0.0
39,635	-				-0.1
39,720	+				+0.2
39,721	-				-1.0
39,822	+				-0.1
39,864	+				-0.2
39,915	-				+0.5
40,270	-		GFF2395	0.65	-1.8
40,270	-		GFF2395	0.65	+0.2
40,270	-		GFF2395	0.65	-1.9
40,530	+		GFF2396	0.21	+2.3
40,530	+		GFF2396	0.21	-0.1
40,530	+		GFF2396	0.21	+0.2
40,530	+		GFF2396	0.21	+0.7
40,531	-		GFF2396	0.22	-1.8
40,531	-		GFF2396	0.22	-0.6
40,675	+		GFF2396	0.57	-1.2
40,676	-		GFF2396	0.57	+0.7
40,676	-		GFF2396	0.57	-1.5
40,797	+		GFF2396	0.86	-0.0
40,797	+		GFF2396	0.86	-1.1
41,038	+				+1.3
41,039	-				+1.2
41,039	-				+0.2
41,039	-				+0.2
41,046	+				+0.2
41,047	-				+0.1
41,047	-				+1.0
41,090	+				+1.0
41,090	+				+0.3
41,090	+				-1.6
41,091	-				-0.8
41,348	-				-3.4
41,355	+				-0.8
41,355	+				-0.2
41,356	-				+0.3
41,381	+				+0.4
41,382	-				-0.2
41,439	+				-0.1
41,440	-				+0.7
41,440	-				-2.3
41,440	-				+0.2
41,440	-				-0.3