Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2322

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
1,206,557	+		GFF2321	0.54	+0.2
1,206,557	+		GFF2321	0.54	-0.9
1,206,557	+		GFF2321	0.54	+1.0
1,206,557	+		GFF2321	0.54	+0.2
1,206,557	+		GFF2321	0.54	+0.4
1,206,557	+		GFF2321	0.54	+0.0
1,206,557	+		GFF2321	0.54	+0.8
1,206,557	+		GFF2321	0.54	+0.4
1,206,557	+		GFF2321	0.54	-1.5
1,206,557	+		GFF2321	0.54	-0.1
1,206,557	+		GFF2321	0.54	-0.2
1,206,557	+		GFF2321	0.54	+0.0
1,206,557	+		GFF2321	0.54	-0.9
1,206,558	-		GFF2321	0.54	+0.4
1,206,558	-		GFF2321	0.54	-1.0
1,206,558	-		GFF2321	0.54	-1.5
1,206,558	-		GFF2321	0.54	+0.5
1,206,558	-		GFF2321	0.54	-0.1
1,206,558	-		GFF2321	0.54	-0.9
1,206,558	-		GFF2321	0.54	+0.4
1,206,558	-		GFF2321	0.54	+0.8
1,206,558	-		GFF2321	0.54	+0.2
1,206,558	-		GFF2321	0.54	+1.3
1,206,558	-		GFF2321	0.54	+0.0
1,206,558	-		GFF2321	0.54	-0.2
1,206,558	-		GFF2321	0.54	-0.4
1,206,592	+		GFF2321	0.56	+1.2
1,206,592	+		GFF2321	0.56	-2.8
1,206,633	-		GFF2321	0.58	-0.1
1,206,779	+		GFF2321	0.65	-0.3
1,206,780	-		GFF2321	0.65	+1.2
1,206,780	-		GFF2321	0.65	+0.2
1,206,780	-		GFF2321	0.65	+0.1
1,206,825	-		GFF2321	0.68	+0.4
1,206,825	-		GFF2321	0.68	-1.0
1,206,825	-		GFF2321	0.68	+0.8
1,206,825	-		GFF2321	0.68	-0.3
1,206,825	-		GFF2321	0.68	-0.3
1,206,825	-		GFF2321	0.68	+0.5
1,206,825	-		GFF2321	0.68	+1.5
1,206,929	+		GFF2321	0.73	-0.0
1,206,977	+		GFF2321	0.75	+0.1
1,206,977	+		GFF2321	0.75	-0.8
1,206,977	+		GFF2321	0.75	-0.1
1,206,978	-		GFF2321	0.75	-0.4
1,206,978	-		GFF2321	0.75	-0.3
1,206,978	-		GFF2321	0.75	-0.1
1,206,978	-		GFF2321	0.75	+0.2
1,206,978	-		GFF2321	0.75	+0.2
1,207,385	+				+0.0
1,207,385	-				+1.6
1,207,386	-				-0.5
1,207,386	-				+0.5
1,207,386	-				-0.9
1,207,407	-				-0.0
1,207,707	+		GFF2322	0.23	+2.5
1,207,707	+		GFF2322	0.23	-0.1
1,207,707	+		GFF2322	0.23	+0.5
1,207,707	+		GFF2322	0.23	-0.0
1,207,707	+		GFF2322	0.23	-0.4
1,207,708	-		GFF2322	0.23	-0.6
1,207,708	-		GFF2322	0.23	+0.6
1,207,708	-		GFF2322	0.23	+0.0
1,207,713	+		GFF2322	0.23	-0.4
1,207,713	+		GFF2322	0.23	+0.0
1,207,713	+		GFF2322	0.23	+0.4
1,207,714	-		GFF2322	0.24	-1.4
1,208,013	+		GFF2322	0.52	+1.8
1,208,013	+		GFF2322	0.52	-1.2
1,208,013	+		GFF2322	0.52	+0.8
1,208,014	-		GFF2322	0.52	-0.0
1,208,014	-		GFF2322	0.52	-1.2
1,208,058	+		GFF2322	0.57	-0.3
1,208,097	+		GFF2322	0.60	-1.1
1,208,097	+		GFF2322	0.60	+0.0
1,208,128	-		GFF2322	0.63	-0.4
1,208,128	-		GFF2322	0.63	+0.3
1,208,128	-		GFF2322	0.63	-1.2
1,208,296	-		GFF2322	0.79	+0.7
1,208,478	+				-0.2
1,208,478	+				+1.6
1,208,478	+				+1.8
1,208,478	+				-0.4
1,208,479	-				+1.1
1,208,479	-				-0.7
1,208,479	-				-1.2
1,208,479	-				+0.2
1,208,479	-				+0.8
1,208,479	-				-0.0
1,208,479	-				-1.2
1,208,479	-				+1.5
1,208,479	-				+0.4
1,208,479	-				+0.4
1,208,479	-				+0.8
1,208,479	-				-0.2
1,208,796	+		GFF2323	0.27	-0.2
1,208,827	-		GFF2323	0.31	+0.9
1,208,982	+		GFF2323	0.52	-1.0
1,209,018	+		GFF2323	0.56	-0.1
1,209,018	+		GFF2323	0.56	-1.4
1,209,018	+		GFF2323	0.56	-0.5
1,209,019	-		GFF2323	0.56	-0.4
1,209,019	-		GFF2323	0.56	-1.2
1,209,019	-		GFF2323	0.56	-0.3
1,209,019	-		GFF2323	0.56	+0.3
1,209,022	+		GFF2323	0.57	+1.5
1,209,022	+		GFF2323	0.57	-1.4
1,209,022	+		GFF2323	0.57	+0.0
1,209,022	+		GFF2323	0.57	-2.4
1,209,023	-		GFF2323	0.57	-1.5
1,209,023	-		GFF2323	0.57	-0.0
1,209,045	+		GFF2323	0.60	-0.7
1,209,045	+		GFF2323	0.60	-0.9
1,209,045	+		GFF2323	0.60	-0.2
1,209,045	+		GFF2323	0.60	-1.5
1,209,045	+		GFF2323	0.60	+0.4
1,209,045	+		GFF2323	0.60	-3.0
1,209,045	+		GFF2323	0.60	-2.0
1,209,046	-		GFF2323	0.60	-1.9
1,209,069	+		GFF2323	0.63	-0.7
1,209,144	+		GFF2323	0.73	-0.8
1,209,145	-		GFF2323	0.73	-1.0
1,209,177	+		GFF2323	0.77	+2.3
1,209,177	+		GFF2323	0.77	-1.4
1,209,231	+		GFF2323	0.84	-0.5
1,209,231	+		GFF2323	0.84	-2.7
1,209,232	-		GFF2323	0.84	+0.8
1,209,232	-		GFF2323	0.84	-0.8
1,209,232	-		GFF2323	0.84	-1.8
1,209,384	+				-1.2
1,209,384	+				-0.8