Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2286

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
1,170,491	-				-0.7
1,170,510	-				+1.8
1,170,510	-				-1.2
1,170,580	-				-0.4
1,170,825	+		GFF2285	0.33	-0.5
1,170,826	-		GFF2285	0.33	-0.8
1,170,826	-		GFF2285	0.33	-0.5
1,170,963	+		GFF2285	0.48	+0.2
1,170,964	-		GFF2285	0.48	+0.1
1,170,964	-		GFF2285	0.48	-1.3
1,171,050	+		GFF2285	0.56	+0.2
1,171,051	-		GFF2285	0.57	+0.0
1,171,051	-		GFF2285	0.57	-0.4
1,171,116	+		GFF2285	0.63	+0.1
1,171,116	+		GFF2285	0.63	+0.2
1,171,117	-		GFF2285	0.63	-1.8
1,171,428	+				+0.2
1,171,982	+		GFF2286	0.51	+0.1
1,171,982	+		GFF2286	0.51	-0.2
1,171,982	+		GFF2286	0.51	+0.4
1,171,982	+		GFF2286	0.51	-2.2
1,171,983	-		GFF2286	0.51	-3.1
1,171,983	-		GFF2286	0.51	-0.9
1,171,983	-		GFF2286	0.51	+0.9
1,171,983	-		GFF2286	0.51	+0.9
1,171,983	-		GFF2286	0.51	-1.6
1,171,983	-		GFF2286	0.51	-0.3
1,172,153	+		GFF2286	0.69	-1.5
1,172,154	-		GFF2286	0.69	-1.7
1,172,154	-		GFF2286	0.69	-0.0
1,172,154	-		GFF2286	0.69	+0.1
1,172,364	-				-0.2
1,172,364	-				-0.6
1,172,429	+				-0.3
1,172,430	-				-0.6
1,172,430	-				+0.8
1,172,430	-				+0.1
1,172,525	-				+0.9
1,172,944	+		GFF2287	0.52	+0.4
1,172,944	+		GFF2287	0.52	+0.8
1,172,944	+		GFF2287	0.52	-1.7
1,172,945	-		GFF2287	0.52	-0.1
1,172,945	-		GFF2287	0.52	-0.7
1,172,989	+		GFF2287	0.57	+0.1
1,172,990	-		GFF2287	0.57	-0.7
1,172,990	-		GFF2287	0.57	+0.1
1,173,025	+		GFF2287	0.61	-0.6
1,173,452	+				+0.3
1,173,452	+				+3.0
1,173,452	+				+0.6
1,173,452	+				-0.4
1,173,452	+				+0.2
1,173,452	+				-2.3