Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF226 and GFF227 are separated by 49 nucleotides GFF227 and GFF228 overlap by 4 nucleotides GFF228 and GFF229 are separated by 57 nucleotides GFF229 and GFF230 overlap by 26 nucleotides
GFF226 - hypothetical protein, at 249,308 to 250,111
GFF226
GFF227 - FIG028593: membrane protein, at 250,161 to 250,712
GFF227
GFF228 - Acetyltransferase (EC 2.3.1.-), at 250,709 to 251,230
GFF228
GFF229 - Rrf2 family transcriptional regulator, group III, at 251,288 to 251,761
GFF229
GFF230 - Thioredoxin reductase (EC 1.8.1.9), at 251,736 to 252,635
GFF230
Position (kb) 250
251
252 Strain fitness (log2 ratio) -2
-1
0
1 at 249.870 kb on - strand, within GFF226 at 249.896 kb on + strand, within GFF226 at 250.231 kb on - strand, within GFF227 at 250.380 kb on + strand, within GFF227 at 250.381 kb on - strand, within GFF227 at 250.744 kb on + strand at 250.744 kb on + strand at 251.066 kb on + strand, within GFF228 at 251.126 kb on + strand, within GFF228 at 251.126 kb on + strand, within GFF228 at 251.272 kb on + strand at 251.285 kb on + strand at 251.522 kb on + strand, within GFF229 at 251.522 kb on + strand, within GFF229 at 251.522 kb on + strand, within GFF229 at 251.522 kb on + strand, within GFF229 at 251.784 kb on + strand at 251.785 kb on - strand at 251.785 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 249,870 - GFF226 0.70 -0.4 249,896 + GFF226 0.73 +0.4 250,231 - GFF227 0.13 -0.4 250,380 + GFF227 0.40 -0.8 250,381 - GFF227 0.40 +0.1 250,744 + -2.2 250,744 + -0.7 251,066 + GFF228 0.68 -0.4 251,126 + GFF228 0.80 -0.5 251,126 + GFF228 0.80 -1.1 251,272 + -0.1 251,285 + +0.2 251,522 + GFF229 0.49 +0.8 251,522 + GFF229 0.49 -1.4 251,522 + GFF229 0.49 +0.0 251,522 + GFF229 0.49 +0.6 251,784 + +0.6 251,785 - +0.6 251,785 - +0.8
Or see this region's nucleotide sequence