Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2121

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
1,011,041	+		GFF2120	0.16	-1.5
1,011,700	+				+0.3
1,011,737	-				-0.8
1,011,737	-				+0.0
1,011,737	-				+0.5
1,011,788	+				+0.1
1,011,923	-				-0.2
1,011,964	+				+0.2
1,012,000	+		GFF2121	0.11	+0.7
1,012,001	-		GFF2121	0.11	+0.6
1,012,468	+		GFF2121	0.46	+0.5
1,012,468	+		GFF2121	0.46	+1.3
1,012,469	-		GFF2121	0.46	-1.4
1,012,580	+		GFF2121	0.54	-1.2
1,012,606	+		GFF2121	0.56	-0.0
1,012,606	+		GFF2121	0.56	-0.0
1,012,723	+		GFF2121	0.65	+1.1
1,012,724	-		GFF2121	0.65	+0.2
1,012,783	+		GFF2121	0.70	-0.8
1,012,783	+		GFF2121	0.70	+0.6
1,012,783	+		GFF2121	0.70	+1.3
1,012,784	-		GFF2121	0.70	-0.4
1,012,784	-		GFF2121	0.70	-0.8
1,012,784	-		GFF2121	0.70	-0.9
1,012,784	-		GFF2121	0.70	-1.5
1,012,784	-		GFF2121	0.70	+1.6
1,012,981	+		GFF2121	0.84	-3.4
1,013,101	+				+0.9
1,013,101	+				+0.0
1,013,102	-				-2.8
1,013,102	-				+0.2
1,013,102	-				-1.7
1,013,262	+				+0.2
1,013,263	-				+0.8
1,013,263	-				+1.8
1,013,482	+				-0.9
1,013,483	-				+0.3
1,013,483	-				-0.3
1,013,504	+				-1.8
1,013,522	+				+0.5
1,013,522	+				+0.0
1,013,522	+				-0.2
1,013,522	+				+0.8
1,013,522	+				-0.0
1,013,522	+				+0.4
1,013,523	-				+0.4
1,013,523	-				-0.2
1,013,523	-				+1.5
1,013,646	+				-0.1
1,013,646	+				+0.1
1,013,646	+				+0.1
1,013,646	+				-0.0
1,013,646	+				-1.4
1,013,646	+				+0.2
1,013,647	-				-1.2
1,013,647	-				-1.2
1,013,647	-				+0.1
1,013,647	-				+0.6
1,013,647	-				+0.3
1,013,647	-				+0.0
1,013,647	-				+2.0
1,013,647	-				-1.5
1,013,790	+		GFF2122	0.70	-0.9
1,013,790	+		GFF2122	0.70	-0.2
1,013,790	+		GFF2122	0.70	+0.2
1,013,790	+		GFF2122	0.70	+0.9
1,013,790	+		GFF2122	0.70	-0.4
1,013,790	+		GFF2122	0.70	-0.0
1,013,791	-		GFF2122	0.70	+0.3
1,013,791	-		GFF2122	0.70	-1.6
1,013,860	+				+0.6
1,013,860	+				-0.3
1,013,860	+				-1.7
1,013,860	+				-1.8
1,013,861	-				-0.1
1,013,861	-				-0.1
1,013,986	+		GFF2123	0.40	+0.5
1,013,986	+		GFF2123	0.40	-1.4
1,014,062	-		GFF2123	0.70	+0.1
1,014,062	-		GFF2123	0.70	-0.5
1,014,147	+				+1.5
1,014,148	-				-1.5
1,014,148	-				+0.3