Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2078

Experiment: Ying_Nucleobase14 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2077 and GFF2078 overlap by 4 nucleotidesGFF2078 and GFF2079 are separated by 63 nucleotides GFF2077 - Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16), at 963,249 to 965,489 GFF2077 GFF2078 - Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16), at 965,486 to 965,950 GFF2078 GFF2079 - Nucleoside-diphosphate-sugar epimerases, at 966,014 to 966,946 GFF2079 Position (kb) 965 966Strain fitness (log2 ratio) -2 -1 0 1 2at 964.894 kb on + strand, within GFF2077at 964.894 kb on + strand, within GFF2077at 964.895 kb on - strand, within GFF2077at 964.895 kb on - strand, within GFF2077at 964.919 kb on + strand, within GFF2077at 965.179 kb on + strand, within GFF2077at 965.179 kb on + strand, within GFF2077at 965.180 kb on + strand, within GFF2077at 965.180 kb on - strand, within GFF2077at 965.180 kb on - strand, within GFF2077at 965.180 kb on - strand, within GFF2077at 965.180 kb on - strand, within GFF2077at 965.180 kb on - strand, within GFF2077at 965.182 kb on + strand, within GFF2077at 965.182 kb on + strand, within GFF2077at 965.407 kb on + strandat 965.407 kb on + strandat 965.407 kb on + strandat 965.407 kb on + strandat 965.407 kb on + strandat 965.408 kb on - strandat 965.408 kb on - strandat 965.408 kb on - strandat 965.408 kb on - strandat 965.408 kb on - strandat 965.547 kb on + strand, within GFF2078at 965.548 kb on - strand, within GFF2078at 965.847 kb on + strand, within GFF2078at 965.847 kb on + strand, within GFF2078at 965.847 kb on + strand, within GFF2078at 965.847 kb on + strand, within GFF2078at 965.848 kb on - strand, within GFF2078at 965.848 kb on - strand, within GFF2078at 965.942 kb on + strandat 965.943 kb on - strandat 965.943 kb on - strandat 965.968 kb on + strandat 965.968 kb on + strandat 965.968 kb on + strandat 965.968 kb on + strandat 965.968 kb on + strandat 965.968 kb on + strandat 965.968 kb on + strandat 965.968 kb on + strandat 965.969 kb on - strandat 965.969 kb on - strandat 965.969 kb on - strandat 965.969 kb on - strandat 965.969 kb on - strandat 965.969 kb on - strandat 965.969 kb on - strandat 965.969 kb on - strandat 966.015 kb on + strandat 966.016 kb on - strandat 966.247 kb on + strand, within GFF2079at 966.248 kb on - strand, within GFF2079at 966.264 kb on + strand, within GFF2079at 966.264 kb on + strand, within GFF2079at 966.264 kb on + strand, within GFF2079at 966.264 kb on + strand, within GFF2079at 966.265 kb on - strand, within GFF2079at 966.265 kb on - strand, within GFF2079at 966.265 kb on - strand, within GFF2079at 966.309 kb on + strand, within GFF2079at 966.310 kb on - strand, within GFF2079at 966.474 kb on + strand, within GFF2079at 966.474 kb on + strand, within GFF2079at 966.474 kb on + strand, within GFF2079at 966.474 kb on + strand, within GFF2079at 966.474 kb on + strand, within GFF2079at 966.475 kb on - strand, within GFF2079at 966.475 kb on - strand, within GFF2079at 966.475 kb on - strand, within GFF2079at 966.475 kb on - strand, within GFF2079at 966.475 kb on - strand, within GFF2079at 966.475 kb on - strand, within GFF2079at 966.475 kb on - strand, within GFF2079at 966.533 kb on + strand, within GFF2079at 966.533 kb on + strand, within GFF2079at 966.534 kb on - strand, within GFF2079at 966.624 kb on + strand, within GFF2079at 966.624 kb on + strand, within GFF2079at 966.624 kb on + strand, within GFF2079at 966.624 kb on + strand, within GFF2079at 966.624 kb on + strand, within GFF2079at 966.624 kb on + strand, within GFF2079at 966.624 kb on + strand, within GFF2079at 966.624 kb on + strand, within GFF2079at 966.625 kb on - strand, within GFF2079at 966.625 kb on - strand, within GFF2079at 966.625 kb on - strand, within GFF2079at 966.625 kb on - strand, within GFF2079at 966.625 kb on - strand, within GFF2079at 966.625 kb on - strand, within GFF2079at 966.625 kb on - strand, within GFF2079at 966.628 kb on + strand, within GFF2079at 966.628 kb on + strand, within GFF2079at 966.628 kb on + strand, within GFF2079at 966.628 kb on + strand, within GFF2079at 966.628 kb on + strand, within GFF2079at 966.628 kb on + strand, within GFF2079at 966.628 kb on + strand, within GFF2079at 966.628 kb on + strand, within GFF2079at 966.628 kb on + strand, within GFF2079at 966.628 kb on + strand, within GFF2079at 966.628 kb on + strand, within GFF2079at 966.628 kb on + strand, within GFF2079at 966.628 kb on + strand, within GFF2079at 966.628 kb on + strand, within GFF2079at 966.628 kb on + strand, within GFF2079at 966.628 kb on + strand, within GFF2079at 966.629 kb on - strand, within GFF2079at 966.629 kb on - strand, within GFF2079at 966.629 kb on - strand, within GFF2079at 966.629 kb on - strand, within GFF2079at 966.629 kb on - strand, within GFF2079at 966.629 kb on - strand, within GFF2079at 966.629 kb on - strand, within GFF2079at 966.629 kb on - strand, within GFF2079at 966.629 kb on - strand, within GFF2079at 966.629 kb on - strand, within GFF2079at 966.629 kb on - strand, within GFF2079at 966.629 kb on - strand, within GFF2079at 966.629 kb on - strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.630 kb on + strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.631 kb on - strand, within GFF2079at 966.753 kb on + strand, within GFF2079at 966.754 kb on - strand, within GFF2079at 966.754 kb on - strand, within GFF2079at 966.754 kb on - strand, within GFF2079at 966.754 kb on - strand, within GFF2079at 966.816 kb on - strand, within GFF2079at 966.879 kb on + strandat 966.880 kb on - strandat 966.946 kb on + strandat 966.946 kb on + strandat 966.946 kb on + strandat 966.946 kb on + strandat 966.947 kb on - strandat 966.947 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1
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964,894 + GFF2077 0.73 -1.2
964,894 + GFF2077 0.73 -0.2
964,895 - GFF2077 0.73 +0.9
964,895 - GFF2077 0.73 +0.4
964,919 + GFF2077 0.75 -2.6
965,179 + GFF2077 0.86 +1.4
965,179 + GFF2077 0.86 +0.2
965,180 + GFF2077 0.86 +0.3
965,180 - GFF2077 0.86 +0.2
965,180 - GFF2077 0.86 -1.3
965,180 - GFF2077 0.86 -0.5
965,180 - GFF2077 0.86 -2.2
965,180 - GFF2077 0.86 +0.2
965,182 + GFF2077 0.86 -0.8
965,182 + GFF2077 0.86 -0.9
965,407 + -0.4
965,407 + +1.0
965,407 + +0.6
965,407 + +0.4
965,407 + -0.7
965,408 - -0.5
965,408 - +0.1
965,408 - +0.6
965,408 - +0.4
965,408 - +0.1
965,547 + GFF2078 0.13 +0.1
965,548 - GFF2078 0.13 -0.6
965,847 + GFF2078 0.78 -0.8
965,847 + GFF2078 0.78 -1.5
965,847 + GFF2078 0.78 +1.1
965,847 + GFF2078 0.78 +0.3
965,848 - GFF2078 0.78 +0.1
965,848 - GFF2078 0.78 +1.4
965,942 + +0.0
965,943 - +0.7
965,943 - +1.8
965,968 + +2.1
965,968 + +1.3
965,968 + -0.8
965,968 + -1.3
965,968 + -1.2
965,968 + +0.7
965,968 + -0.2
965,968 + -1.9
965,969 - +0.6
965,969 - -0.1
965,969 - +0.5
965,969 - -1.7
965,969 - -0.5
965,969 - -1.1
965,969 - +0.7
965,969 - +0.5
966,015 + -1.2
966,016 - +0.1
966,247 + GFF2079 0.25 +0.3
966,248 - GFF2079 0.25 +0.3
966,264 + GFF2079 0.27 -0.2
966,264 + GFF2079 0.27 +0.2
966,264 + GFF2079 0.27 -0.2
966,264 + GFF2079 0.27 -0.6
966,265 - GFF2079 0.27 +0.6
966,265 - GFF2079 0.27 -0.4
966,265 - GFF2079 0.27 +0.1
966,309 + GFF2079 0.32 +0.6
966,310 - GFF2079 0.32 -0.3
966,474 + GFF2079 0.49 +0.5
966,474 + GFF2079 0.49 -0.5
966,474 + GFF2079 0.49 +2.0
966,474 + GFF2079 0.49 +0.5
966,474 + GFF2079 0.49 +0.2
966,475 - GFF2079 0.49 +1.5
966,475 - GFF2079 0.49 +0.1
966,475 - GFF2079 0.49 +0.5
966,475 - GFF2079 0.49 -1.4
966,475 - GFF2079 0.49 -0.1
966,475 - GFF2079 0.49 +0.6
966,475 - GFF2079 0.49 +0.2
966,533 + GFF2079 0.56 -0.4
966,533 + GFF2079 0.56 +2.1
966,534 - GFF2079 0.56 +0.8
966,624 + GFF2079 0.65 +0.3
966,624 + GFF2079 0.65 +0.2
966,624 + GFF2079 0.65 -0.5
966,624 + GFF2079 0.65 +0.5
966,624 + GFF2079 0.65 +0.4
966,624 + GFF2079 0.65 +0.7
966,624 + GFF2079 0.65 +0.5
966,624 + GFF2079 0.65 +0.7
966,625 - GFF2079 0.65 -0.2
966,625 - GFF2079 0.65 -1.5
966,625 - GFF2079 0.65 +1.1
966,625 - GFF2079 0.65 -0.1
966,625 - GFF2079 0.65 -0.4
966,625 - GFF2079 0.65 -1.7
966,625 - GFF2079 0.65 +0.1
966,628 + GFF2079 0.66 -1.2
966,628 + GFF2079 0.66 -1.2
966,628 + GFF2079 0.66 -0.3
966,628 + GFF2079 0.66 +0.0
966,628 + GFF2079 0.66 -1.0
966,628 + GFF2079 0.66 +1.2
966,628 + GFF2079 0.66 +0.1
966,628 + GFF2079 0.66 -1.6
966,628 + GFF2079 0.66 +0.2
966,628 + GFF2079 0.66 -2.4
966,628 + GFF2079 0.66 +1.3
966,628 + GFF2079 0.66 +0.8
966,628 + GFF2079 0.66 +0.8
966,628 + GFF2079 0.66 -0.1
966,628 + GFF2079 0.66 -0.2
966,628 + GFF2079 0.66 +0.3
966,629 - GFF2079 0.66 +0.1
966,629 - GFF2079 0.66 -0.6
966,629 - GFF2079 0.66 +0.3
966,629 - GFF2079 0.66 +0.3
966,629 - GFF2079 0.66 +0.9
966,629 - GFF2079 0.66 +0.4
966,629 - GFF2079 0.66 -1.0
966,629 - GFF2079 0.66 -1.2
966,629 - GFF2079 0.66 -0.2
966,629 - GFF2079 0.66 +1.7
966,629 - GFF2079 0.66 +0.2
966,629 - GFF2079 0.66 +0.6
966,629 - GFF2079 0.66 -2.6
966,630 + GFF2079 0.66 -0.2
966,630 + GFF2079 0.66 -0.6
966,630 + GFF2079 0.66 +1.2
966,630 + GFF2079 0.66 -0.2
966,630 + GFF2079 0.66 +0.2
966,630 + GFF2079 0.66 +0.0
966,630 + GFF2079 0.66 -1.0
966,630 + GFF2079 0.66 +1.7
966,630 + GFF2079 0.66 -0.4
966,630 + GFF2079 0.66 +0.1
966,630 + GFF2079 0.66 +0.2
966,630 + GFF2079 0.66 -0.2
966,630 + GFF2079 0.66 -1.4
966,630 + GFF2079 0.66 -1.5
966,630 + GFF2079 0.66 -2.1
966,630 + GFF2079 0.66 +0.4
966,630 + GFF2079 0.66 -0.4
966,630 + GFF2079 0.66 +0.5
966,630 + GFF2079 0.66 +0.8
966,630 + GFF2079 0.66 -2.0
966,631 - GFF2079 0.66 -2.0
966,631 - GFF2079 0.66 +0.6
966,631 - GFF2079 0.66 +1.1
966,631 - GFF2079 0.66 -0.4
966,631 - GFF2079 0.66 -1.0
966,631 - GFF2079 0.66 -2.2
966,631 - GFF2079 0.66 +0.9
966,631 - GFF2079 0.66 -0.0
966,631 - GFF2079 0.66 -0.2
966,631 - GFF2079 0.66 +0.5
966,631 - GFF2079 0.66 +0.3
966,631 - GFF2079 0.66 -1.0
966,631 - GFF2079 0.66 -0.8
966,631 - GFF2079 0.66 +2.3
966,631 - GFF2079 0.66 +0.3
966,631 - GFF2079 0.66 -1.2
966,631 - GFF2079 0.66 +1.4
966,631 - GFF2079 0.66 +0.3
966,631 - GFF2079 0.66 -1.0
966,631 - GFF2079 0.66 -0.2
966,631 - GFF2079 0.66 +0.0
966,631 - GFF2079 0.66 +0.1
966,631 - GFF2079 0.66 -2.5
966,631 - GFF2079 0.66 +0.0
966,631 - GFF2079 0.66 -0.1
966,631 - GFF2079 0.66 -0.7
966,631 - GFF2079 0.66 -1.5
966,631 - GFF2079 0.66 -0.5
966,753 + GFF2079 0.79 -2.1
966,754 - GFF2079 0.79 -1.6
966,754 - GFF2079 0.79 +0.5
966,754 - GFF2079 0.79 +1.2
966,754 - GFF2079 0.79 -0.0
966,816 - GFF2079 0.86 -0.8
966,879 + +0.0
966,880 - -0.3
966,946 + -0.1
966,946 + -0.5
966,946 + -0.0
966,946 + +0.2
966,947 - -0.9
966,947 - -2.5

Or see this region's nucleotide sequence