Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF207

Experiment: Ying_Nucleobase14 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF206 and GFF207 are separated by 3 nucleotidesGFF207 and GFF208 are separated by 86 nucleotides GFF206 - Nucleoside ABC transporter, permease protein 1, at 223,485 to 224,540 GFF206 GFF207 - Nucleoside ABC transporter, permease protein 2, at 224,544 to 225,464 GFF207 GFF208 - Nucleoside ABC transporter, periplasmic nucleoside-binding protein, at 225,551 to 226,669 GFF208 Position (kb) 224 225 226Strain fitness (log2 ratio) -2 -1 0 1 2at 223.653 kb on + strand, within GFF206at 223.761 kb on + strand, within GFF206at 223.761 kb on + strand, within GFF206at 223.761 kb on + strand, within GFF206at 223.762 kb on - strand, within GFF206at 223.762 kb on - strand, within GFF206at 223.762 kb on - strand, within GFF206at 223.762 kb on - strand, within GFF206at 223.944 kb on + strand, within GFF206at 223.945 kb on - strand, within GFF206at 224.004 kb on + strand, within GFF206at 224.005 kb on - strand, within GFF206at 224.139 kb on + strand, within GFF206at 224.304 kb on + strand, within GFF206at 224.304 kb on + strand, within GFF206at 224.406 kb on + strand, within GFF206at 224.406 kb on + strand, within GFF206at 224.505 kb on - strandat 224.539 kb on - strandat 224.808 kb on + strand, within GFF207at 224.871 kb on + strand, within GFF207at 224.872 kb on - strand, within GFF207at 224.872 kb on - strand, within GFF207at 224.973 kb on + strand, within GFF207at 224.973 kb on + strand, within GFF207at 224.973 kb on + strand, within GFF207at 224.973 kb on + strand, within GFF207at 224.974 kb on - strand, within GFF207at 224.974 kb on - strand, within GFF207at 224.974 kb on - strand, within GFF207at 224.974 kb on - strand, within GFF207at 224.974 kb on - strand, within GFF207at 225.153 kb on + strand, within GFF207at 225.153 kb on + strand, within GFF207at 225.153 kb on + strand, within GFF207at 225.273 kb on + strand, within GFF207at 225.274 kb on - strand, within GFF207at 225.360 kb on + strand, within GFF207at 225.361 kb on - strand, within GFF207at 225.361 kb on - strand, within GFF207at 225.361 kb on - strand, within GFF207at 225.462 kb on + strandat 225.463 kb on - strandat 225.692 kb on + strand, within GFF208at 225.884 kb on + strand, within GFF208at 225.950 kb on + strand, within GFF208at 225.977 kb on + strand, within GFF208at 225.977 kb on + strand, within GFF208at 225.977 kb on + strand, within GFF208at 225.992 kb on + strand, within GFF208at 225.992 kb on + strand, within GFF208at 226.004 kb on + strand, within GFF208at 226.004 kb on + strand, within GFF208at 226.004 kb on + strand, within GFF208at 226.319 kb on + strand, within GFF208at 226.320 kb on - strand, within GFF208at 226.368 kb on - strand, within GFF208at 226.370 kb on + strand, within GFF208at 226.370 kb on + strand, within GFF208at 226.370 kb on + strand, within GFF208at 226.370 kb on + strand, within GFF208at 226.370 kb on + strand, within GFF208at 226.371 kb on - strand, within GFF208at 226.371 kb on - strand, within GFF208

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1
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223,653 + GFF206 0.16 +1.2
223,761 + GFF206 0.26 +0.6
223,761 + GFF206 0.26 +0.6
223,761 + GFF206 0.26 +0.4
223,762 - GFF206 0.26 +0.7
223,762 - GFF206 0.26 +0.8
223,762 - GFF206 0.26 +0.2
223,762 - GFF206 0.26 +0.5
223,944 + GFF206 0.43 +0.2
223,945 - GFF206 0.44 +0.6
224,004 + GFF206 0.49 +1.0
224,005 - GFF206 0.49 +0.5
224,139 + GFF206 0.62 +1.2
224,304 + GFF206 0.78 +1.4
224,304 + GFF206 0.78 +0.1
224,406 + GFF206 0.87 +0.2
224,406 + GFF206 0.87 +0.8
224,505 - +1.7
224,539 - +0.6
224,808 + GFF207 0.29 -0.2
224,871 + GFF207 0.36 -1.8
224,872 - GFF207 0.36 +1.0
224,872 - GFF207 0.36 +1.0
224,973 + GFF207 0.47 +0.8
224,973 + GFF207 0.47 +0.2
224,973 + GFF207 0.47 +1.5
224,973 + GFF207 0.47 +0.3
224,974 - GFF207 0.47 +0.1
224,974 - GFF207 0.47 +0.6
224,974 - GFF207 0.47 +2.3
224,974 - GFF207 0.47 +1.1
224,974 - GFF207 0.47 -1.9
225,153 + GFF207 0.66 +0.6
225,153 + GFF207 0.66 -0.6
225,153 + GFF207 0.66 +0.5
225,273 + GFF207 0.79 -0.0
225,274 - GFF207 0.79 +0.1
225,360 + GFF207 0.89 +0.6
225,361 - GFF207 0.89 +0.4
225,361 - GFF207 0.89 +0.2
225,361 - GFF207 0.89 +1.2
225,462 + +1.1
225,463 - -1.0
225,692 + GFF208 0.13 +1.3
225,884 + GFF208 0.30 +0.5
225,950 + GFF208 0.36 +1.4
225,977 + GFF208 0.38 +0.7
225,977 + GFF208 0.38 -1.2
225,977 + GFF208 0.38 +1.1
225,992 + GFF208 0.39 +0.5
225,992 + GFF208 0.39 +0.8
226,004 + GFF208 0.40 +2.7
226,004 + GFF208 0.40 +1.4
226,004 + GFF208 0.40 -0.7
226,319 + GFF208 0.69 -0.3
226,320 - GFF208 0.69 -1.0
226,368 - GFF208 0.73 +2.0
226,370 + GFF208 0.73 -1.7
226,370 + GFF208 0.73 +1.1
226,370 + GFF208 0.73 +0.7
226,370 + GFF208 0.73 +0.1
226,370 + GFF208 0.73 +1.0
226,371 - GFF208 0.73 -1.0
226,371 - GFF208 0.73 +0.2

Or see this region's nucleotide sequence