Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1970

Experiment: Ying_Nucleobase14 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1968 and GFF1969 are separated by 23 nucleotidesGFF1969 and GFF1970 are separated by 70 nucleotidesGFF1970 and GFF1971 are separated by 69 nucleotidesGFF1971 and GFF1972 are separated by 154 nucleotides GFF1968 - FIG000557: hypothetical protein co-occurring with RecR, at 842,013 to 843,011 GFF1968 GFF1969 - Ser/Thr protein phosphatase family protein, at 843,035 to 843,829 GFF1969 GFF1970 - Universal stress family protein, at 843,900 to 844,322 GFF1970 GFF1971 - Transcriptional regulator, TetR family, at 844,392 to 844,976 GFF1971 GFF1972 - Transcriptional regulator, at 845,131 to 846,060 GFF1972 Position (kb) 843 844 845Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 842.938 kb on + strandat 842.959 kb on - strandat 843.087 kb on + strandat 843.087 kb on + strandat 843.088 kb on - strandat 843.143 kb on + strand, within GFF1969at 843.143 kb on + strand, within GFF1969at 843.143 kb on + strand, within GFF1969at 843.143 kb on + strand, within GFF1969at 843.144 kb on - strand, within GFF1969at 843.144 kb on - strand, within GFF1969at 843.144 kb on - strand, within GFF1969at 843.144 kb on - strand, within GFF1969at 843.248 kb on + strand, within GFF1969at 843.249 kb on - strand, within GFF1969at 843.249 kb on - strand, within GFF1969at 843.383 kb on + strand, within GFF1969at 843.383 kb on + strand, within GFF1969at 843.383 kb on + strand, within GFF1969at 843.383 kb on + strand, within GFF1969at 843.383 kb on + strand, within GFF1969at 843.384 kb on - strand, within GFF1969at 843.384 kb on - strand, within GFF1969at 843.413 kb on + strand, within GFF1969at 843.414 kb on - strand, within GFF1969at 843.431 kb on + strand, within GFF1969at 843.431 kb on + strand, within GFF1969at 843.431 kb on + strand, within GFF1969at 843.431 kb on + strand, within GFF1969at 843.432 kb on - strand, within GFF1969at 843.432 kb on - strand, within GFF1969at 843.432 kb on - strand, within GFF1969at 843.432 kb on - strand, within GFF1969at 843.749 kb on + strand, within GFF1969at 843.749 kb on + strand, within GFF1969at 843.861 kb on + strandat 843.861 kb on + strandat 843.861 kb on + strandat 843.861 kb on + strandat 843.861 kb on + strandat 843.861 kb on + strandat 843.861 kb on + strandat 843.861 kb on + strandat 843.861 kb on + strandat 843.861 kb on + strandat 843.861 kb on + strandat 843.861 kb on + strandat 843.861 kb on + strandat 843.861 kb on + strandat 843.861 kb on + strandat 843.861 kb on + strandat 843.861 kb on + strandat 843.861 kb on + strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.863 kb on - strandat 843.883 kb on + strandat 843.883 kb on + strandat 843.883 kb on + strandat 843.883 kb on + strandat 843.883 kb on + strandat 843.883 kb on + strandat 843.883 kb on + strandat 843.883 kb on + strandat 843.883 kb on + strandat 843.883 kb on + strandat 843.884 kb on - strandat 843.884 kb on - strandat 843.884 kb on - strandat 843.884 kb on - strandat 843.933 kb on + strandat 843.933 kb on + strandat 843.934 kb on - strandat 843.934 kb on - strandat 843.934 kb on - strandat 843.934 kb on - strandat 843.954 kb on + strand, within GFF1970at 843.954 kb on + strand, within GFF1970at 843.954 kb on + strand, within GFF1970at 843.954 kb on + strand, within GFF1970at 843.954 kb on + strand, within GFF1970at 843.954 kb on + strand, within GFF1970at 843.955 kb on - strand, within GFF1970at 843.955 kb on - strand, within GFF1970at 844.071 kb on + strand, within GFF1970at 844.071 kb on + strand, within GFF1970at 844.072 kb on - strand, within GFF1970at 844.072 kb on - strand, within GFF1970at 844.074 kb on + strand, within GFF1970at 844.074 kb on + strand, within GFF1970at 844.074 kb on + strand, within GFF1970at 844.074 kb on + strand, within GFF1970at 844.075 kb on - strand, within GFF1970at 844.075 kb on - strand, within GFF1970at 844.075 kb on - strand, within GFF1970at 844.075 kb on - strand, within GFF1970at 844.075 kb on - strand, within GFF1970at 844.075 kb on - strand, within GFF1970at 844.075 kb on - strand, within GFF1970at 844.075 kb on - strand, within GFF1970at 844.456 kb on + strand, within GFF1971at 844.507 kb on + strand, within GFF1971at 844.508 kb on - strand, within GFF1971at 844.516 kb on + strand, within GFF1971at 844.516 kb on + strand, within GFF1971at 844.517 kb on - strand, within GFF1971at 844.517 kb on - strand, within GFF1971at 844.517 kb on - strand, within GFF1971at 844.517 kb on - strand, within GFF1971at 844.621 kb on + strand, within GFF1971at 844.621 kb on + strand, within GFF1971at 844.621 kb on + strand, within GFF1971at 844.621 kb on + strand, within GFF1971at 844.621 kb on + strand, within GFF1971at 844.621 kb on + strand, within GFF1971at 844.621 kb on + strand, within GFF1971at 844.621 kb on + strand, within GFF1971at 844.622 kb on - strand, within GFF1971at 844.622 kb on - strand, within GFF1971at 844.622 kb on - strand, within GFF1971at 844.622 kb on - strand, within GFF1971at 844.622 kb on - strand, within GFF1971at 844.852 kb on + strand, within GFF1971at 844.852 kb on + strand, within GFF1971at 844.852 kb on + strand, within GFF1971at 844.852 kb on + strand, within GFF1971at 844.852 kb on + strand, within GFF1971at 844.852 kb on + strand, within GFF1971at 844.852 kb on + strand, within GFF1971at 844.852 kb on + strand, within GFF1971at 844.853 kb on - strand, within GFF1971at 844.853 kb on - strand, within GFF1971at 844.853 kb on - strand, within GFF1971at 844.853 kb on - strand, within GFF1971at 844.853 kb on - strand, within GFF1971at 844.853 kb on - strand, within GFF1971at 844.853 kb on - strand, within GFF1971at 845.042 kb on + strandat 845.043 kb on - strandat 845.043 kb on - strandat 845.043 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1
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842,938 + +0.6
842,959 - +0.3
843,087 + +0.8
843,087 + -0.3
843,088 - +0.0
843,143 + GFF1969 0.14 -1.3
843,143 + GFF1969 0.14 -0.8
843,143 + GFF1969 0.14 -1.5
843,143 + GFF1969 0.14 -1.9
843,144 - GFF1969 0.14 +1.3
843,144 - GFF1969 0.14 -0.3
843,144 - GFF1969 0.14 -0.5
843,144 - GFF1969 0.14 -0.8
843,248 + GFF1969 0.27 +1.5
843,249 - GFF1969 0.27 +1.8
843,249 - GFF1969 0.27 -0.2
843,383 + GFF1969 0.44 -0.5
843,383 + GFF1969 0.44 -0.8
843,383 + GFF1969 0.44 -0.0
843,383 + GFF1969 0.44 +0.1
843,383 + GFF1969 0.44 +0.1
843,384 - GFF1969 0.44 -0.4
843,384 - GFF1969 0.44 -0.4
843,413 + GFF1969 0.48 +1.0
843,414 - GFF1969 0.48 -1.9
843,431 + GFF1969 0.50 -0.5
843,431 + GFF1969 0.50 -0.0
843,431 + GFF1969 0.50 +0.7
843,431 + GFF1969 0.50 -0.1
843,432 - GFF1969 0.50 +0.4
843,432 - GFF1969 0.50 -1.0
843,432 - GFF1969 0.50 -0.2
843,432 - GFF1969 0.50 +0.3
843,749 + GFF1969 0.90 +2.0
843,749 + GFF1969 0.90 +1.2
843,861 + +0.3
843,861 + -0.6
843,861 + +0.8
843,861 + +0.7
843,861 + +1.3
843,861 + -0.4
843,861 + -1.3
843,861 + -0.3
843,861 + +1.0
843,861 + -0.8
843,861 + +0.2
843,861 + +0.9
843,861 + -0.8
843,861 + -1.3
843,861 + +0.6
843,861 + +1.2
843,861 + -0.3
843,861 + -1.5
843,862 - -0.1
843,862 - +0.2
843,862 - +0.7
843,862 - +0.3
843,862 - +0.0
843,862 - +0.8
843,862 - -0.3
843,862 - -0.3
843,862 - -0.8
843,862 - +0.2
843,862 - -2.2
843,862 - -0.8
843,862 - -0.5
843,862 - +0.1
843,862 - +0.0
843,862 - -1.8
843,862 - -2.9
843,862 - -0.3
843,862 - +1.5
843,862 - -0.7
843,862 - +0.6
843,862 - +1.4
843,863 - -1.3
843,883 + -0.3
843,883 + +1.8
843,883 + -1.5
843,883 + +1.4
843,883 + -1.4
843,883 + +0.4
843,883 + +1.0
843,883 + +0.5
843,883 + +0.1
843,883 + +0.4
843,884 - +0.2
843,884 - +0.5
843,884 - -0.1
843,884 - +0.2
843,933 + +0.1
843,933 + -0.7
843,934 - -0.3
843,934 - +0.1
843,934 - +1.2
843,934 - +0.2
843,954 + GFF1970 0.13 -0.7
843,954 + GFF1970 0.13 -0.8
843,954 + GFF1970 0.13 -1.8
843,954 + GFF1970 0.13 -0.0
843,954 + GFF1970 0.13 +1.0
843,954 + GFF1970 0.13 +0.5
843,955 - GFF1970 0.13 +0.1
843,955 - GFF1970 0.13 -1.0
844,071 + GFF1970 0.40 -1.8
844,071 + GFF1970 0.40 -0.1
844,072 - GFF1970 0.41 +0.5
844,072 - GFF1970 0.41 -1.8
844,074 + GFF1970 0.41 +0.2
844,074 + GFF1970 0.41 -1.8
844,074 + GFF1970 0.41 -0.0
844,074 + GFF1970 0.41 -1.6
844,075 - GFF1970 0.41 +1.3
844,075 - GFF1970 0.41 -0.7
844,075 - GFF1970 0.41 +0.2
844,075 - GFF1970 0.41 -0.5
844,075 - GFF1970 0.41 +0.8
844,075 - GFF1970 0.41 +0.5
844,075 - GFF1970 0.41 -0.8
844,075 - GFF1970 0.41 +0.4
844,456 + GFF1971 0.11 +0.5
844,507 + GFF1971 0.20 +1.2
844,508 - GFF1971 0.20 -0.5
844,516 + GFF1971 0.21 +1.0
844,516 + GFF1971 0.21 -0.6
844,517 - GFF1971 0.21 +0.3
844,517 - GFF1971 0.21 +0.6
844,517 - GFF1971 0.21 +0.1
844,517 - GFF1971 0.21 +1.0
844,621 + GFF1971 0.39 -0.8
844,621 + GFF1971 0.39 +1.2
844,621 + GFF1971 0.39 -1.4
844,621 + GFF1971 0.39 -1.3
844,621 + GFF1971 0.39 -0.8
844,621 + GFF1971 0.39 +0.1
844,621 + GFF1971 0.39 +1.1
844,621 + GFF1971 0.39 +0.9
844,622 - GFF1971 0.39 -0.8
844,622 - GFF1971 0.39 +0.0
844,622 - GFF1971 0.39 -1.9
844,622 - GFF1971 0.39 +1.2
844,622 - GFF1971 0.39 +2.3
844,852 + GFF1971 0.79 +0.1
844,852 + GFF1971 0.79 +0.3
844,852 + GFF1971 0.79 +0.1
844,852 + GFF1971 0.79 +0.7
844,852 + GFF1971 0.79 -0.6
844,852 + GFF1971 0.79 +1.8
844,852 + GFF1971 0.79 +1.3
844,852 + GFF1971 0.79 -1.5
844,853 - GFF1971 0.79 -0.1
844,853 - GFF1971 0.79 -1.0
844,853 - GFF1971 0.79 +0.3
844,853 - GFF1971 0.79 +1.1
844,853 - GFF1971 0.79 +0.4
844,853 - GFF1971 0.79 -1.2
844,853 - GFF1971 0.79 -0.1
845,042 + +0.5
845,043 - +0.6
845,043 - +0.8
845,043 - +0.7

Or see this region's nucleotide sequence