Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1905

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
778,976	+				+0.5
778,976	+				+0.4
778,976	+				+0.4
778,977	-				-0.3
779,920	+				-0.5
779,920	+				+0.3
779,921	-				-0.3
780,435	+		GFF1905	0.62	+0.4
780,436	-		GFF1905	0.62	+0.7
780,667	-				-0.9
780,667	-				+0.6
780,667	-				+0.1
780,667	-				-0.2
780,712	+				-1.3
780,713	-				+0.8
780,714	+				+0.3
780,715	-				-0.8
780,775	+				-2.3
781,052	-		GFF1906	0.43	-1.2
781,463	-				-2.3
781,478	+				+0.4
781,478	+				-0.3
781,478	+				+0.7
781,478	+				-0.5
781,478	+				+0.8
781,479	-				-1.0
781,479	-				+0.9
781,479	-				-0.4
781,479	-				+1.2
781,479	-				-0.2
781,479	-				-1.2
781,658	+				-0.5