Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF171 and GFF172 are separated by 57 nucleotides GFF172 and GFF173 are separated by 113 nucleotides GFF173 and GFF174 are separated by 16 nucleotides
GFF171 - hypothetical protein, at 186,137 to 186,436
GFF171
GFF172 - Transcriptional regulator, GntR family, at 186,494 to 187,144
GFF172
GFF173 - TRAP-type C4-dicarboxylate transport system, small permease component, at 187,258 to 187,791
GFF173
GFF174 - TRAP-type C4-dicarboxylate transport system, large permease component, at 187,808 to 189,097
GFF174
Position (kb) 187
188 Strain fitness (log2 ratio) -1
0
1 at 186.324 kb on + strand, within GFF171 at 186.324 kb on + strand, within GFF171 at 186.327 kb on + strand, within GFF171 at 186.328 kb on - strand, within GFF171 at 186.429 kb on + strand at 186.429 kb on + strand at 186.429 kb on + strand at 186.430 kb on - strand at 186.430 kb on - strand at 186.441 kb on + strand at 186.679 kb on - strand, within GFF172 at 186.679 kb on - strand, within GFF172 at 186.694 kb on - strand, within GFF172 at 187.173 kb on + strand at 187.173 kb on + strand at 187.175 kb on + strand at 187.176 kb on - strand at 187.181 kb on + strand at 187.182 kb on - strand at 187.435 kb on + strand, within GFF173 at 187.435 kb on + strand, within GFF173 at 187.436 kb on - strand, within GFF173 at 187.672 kb on + strand, within GFF173 at 187.673 kb on - strand, within GFF173 at 188.196 kb on - strand, within GFF174
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 186,324 + GFF171 0.62 +0.6 186,324 + GFF171 0.62 +0.1 186,327 + GFF171 0.63 -1.0 186,328 - GFF171 0.64 +0.1 186,429 + +0.5 186,429 + -0.7 186,429 + -0.1 186,430 - +0.8 186,430 - -0.8 186,441 + +0.9 186,679 - GFF172 0.28 -1.5 186,679 - GFF172 0.28 -0.6 186,694 - GFF172 0.31 -1.1 187,173 + +1.4 187,173 + +0.6 187,175 + -1.2 187,176 - -1.6 187,181 + +0.1 187,182 - -0.3 187,435 + GFF173 0.33 +0.5 187,435 + GFF173 0.33 -0.1 187,436 - GFF173 0.33 -0.5 187,672 + GFF173 0.78 -1.2 187,673 - GFF173 0.78 -0.3 188,196 - GFF174 0.30 -0.7
Or see this region's nucleotide sequence