Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1696 and GFF1697 are separated by 35 nucleotides GFF1697 and GFF1698 are separated by 4 nucleotides GFF1698 and GFF1699 overlap by 1 nucleotides GFF1699 and GFF1700 are separated by 132 nucleotides
GFF1696 - Probable MFS transporter precursor, at 546,461 to 547,714
GFF1696
GFF1697 - hypothetical protein, at 547,750 to 548,130
GFF1697
GFF1698 - Ferredoxin, at 548,135 to 548,461
GFF1698
GFF1699 - Excinuclease ABC subunit A, dimeric form, at 548,461 to 554,340
GFF1699
GFF1700 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 554,473 to 555,606
GFF1700
Position (kb) 548
549
550
551
552
553
554
555 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 547.473 kb on - strand, within GFF1696 at 547.473 kb on - strand, within GFF1696 at 547.553 kb on + strand, within GFF1696 at 547.553 kb on + strand, within GFF1696 at 547.553 kb on + strand, within GFF1696 at 547.553 kb on + strand, within GFF1696 at 547.554 kb on - strand, within GFF1696 at 547.554 kb on - strand, within GFF1696 at 547.554 kb on - strand, within GFF1696 at 547.554 kb on - strand, within GFF1696 at 547.855 kb on - strand, within GFF1697 at 548.280 kb on + strand, within GFF1698 at 548.729 kb on + strand at 548.729 kb on + strand at 548.730 kb on - strand at 548.730 kb on - strand at 548.858 kb on + strand at 548.858 kb on + strand at 548.858 kb on + strand at 549.140 kb on + strand, within GFF1699 at 549.206 kb on + strand, within GFF1699 at 549.206 kb on + strand, within GFF1699 at 549.207 kb on - strand, within GFF1699 at 549.207 kb on - strand, within GFF1699 at 549.317 kb on + strand, within GFF1699 at 549.592 kb on - strand, within GFF1699 at 549.833 kb on + strand, within GFF1699 at 549.833 kb on + strand, within GFF1699 at 549.833 kb on + strand, within GFF1699 at 549.833 kb on - strand, within GFF1699 at 549.834 kb on - strand, within GFF1699 at 549.834 kb on - strand, within GFF1699 at 549.834 kb on - strand, within GFF1699 at 549.834 kb on - strand, within GFF1699 at 549.834 kb on - strand, within GFF1699 at 549.932 kb on + strand, within GFF1699 at 549.932 kb on + strand, within GFF1699 at 549.933 kb on - strand, within GFF1699 at 550.319 kb on + strand, within GFF1699 at 550.682 kb on + strand, within GFF1699 at 550.682 kb on + strand, within GFF1699 at 550.739 kb on + strand, within GFF1699 at 550.832 kb on + strand, within GFF1699 at 550.833 kb on - strand, within GFF1699 at 551.645 kb on + strand, within GFF1699 at 551.645 kb on + strand, within GFF1699 at 551.645 kb on + strand, within GFF1699 at 551.646 kb on - strand, within GFF1699 at 551.646 kb on - strand, within GFF1699 at 551.837 kb on + strand, within GFF1699 at 551.837 kb on + strand, within GFF1699 at 551.838 kb on - strand, within GFF1699 at 551.940 kb on - strand, within GFF1699 at 551.940 kb on - strand, within GFF1699 at 551.940 kb on - strand, within GFF1699 at 552.005 kb on + strand, within GFF1699 at 552.005 kb on + strand, within GFF1699 at 552.005 kb on + strand, within GFF1699 at 552.680 kb on + strand, within GFF1699 at 552.681 kb on - strand, within GFF1699 at 552.704 kb on + strand, within GFF1699 at 552.705 kb on - strand, within GFF1699 at 553.067 kb on + strand, within GFF1699 at 553.067 kb on + strand, within GFF1699 at 553.085 kb on + strand, within GFF1699 at 553.109 kb on + strand, within GFF1699 at 553.328 kb on + strand, within GFF1699 at 553.328 kb on + strand, within GFF1699 at 553.329 kb on - strand, within GFF1699 at 553.499 kb on + strand, within GFF1699 at 553.499 kb on + strand, within GFF1699 at 553.499 kb on + strand, within GFF1699 at 553.500 kb on - strand, within GFF1699 at 553.719 kb on - strand, within GFF1699 at 553.841 kb on + strand at 553.841 kb on + strand at 553.841 kb on + strand at 553.841 kb on + strand at 553.841 kb on + strand at 553.841 kb on + strand at 553.841 kb on + strand at 553.842 kb on - strand at 554.070 kb on - strand at 554.372 kb on + strand at 554.372 kb on + strand at 554.372 kb on + strand at 554.372 kb on + strand at 554.372 kb on + strand at 554.372 kb on + strand at 554.373 kb on - strand at 554.373 kb on - strand at 554.373 kb on - strand at 554.404 kb on - strand at 554.442 kb on + strand at 554.442 kb on + strand at 554.442 kb on + strand at 554.442 kb on + strand at 554.443 kb on - strand at 554.443 kb on - strand at 554.443 kb on - strand at 554.443 kb on - strand at 554.470 kb on + strand at 554.470 kb on + strand at 554.470 kb on + strand at 554.470 kb on + strand at 554.470 kb on + strand at 554.471 kb on - strand at 554.471 kb on - strand at 554.471 kb on - strand at 554.471 kb on - strand at 554.472 kb on + strand at 554.472 kb on + strand at 554.472 kb on + strand at 554.472 kb on + strand at 554.473 kb on - strand at 554.473 kb on - strand at 554.473 kb on - strand at 554.473 kb on - strand at 554.641 kb on + strand, within GFF1700 at 554.642 kb on - strand, within GFF1700 at 554.642 kb on - strand, within GFF1700 at 554.642 kb on - strand, within GFF1700 at 554.920 kb on + strand, within GFF1700 at 554.920 kb on + strand, within GFF1700 at 555.328 kb on + strand, within GFF1700 at 555.328 kb on + strand, within GFF1700 at 555.328 kb on + strand, within GFF1700 at 555.329 kb on - strand, within GFF1700 at 555.329 kb on - strand, within GFF1700
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 547,473 - GFF1696 0.81 +0.1 547,473 - GFF1696 0.81 -0.2 547,553 + GFF1696 0.87 +0.9 547,553 + GFF1696 0.87 -0.7 547,553 + GFF1696 0.87 -0.7 547,553 + GFF1696 0.87 +0.3 547,554 - GFF1696 0.87 +0.0 547,554 - GFF1696 0.87 +0.1 547,554 - GFF1696 0.87 -1.1 547,554 - GFF1696 0.87 -1.0 547,855 - GFF1697 0.28 +1.1 548,280 + GFF1698 0.44 +0.9 548,729 + +0.3 548,729 + -0.4 548,730 - -0.4 548,730 - -0.2 548,858 + +0.6 548,858 + +0.1 548,858 + -0.5 549,140 + GFF1699 0.12 -0.2 549,206 + GFF1699 0.13 -1.4 549,206 + GFF1699 0.13 +0.1 549,207 - GFF1699 0.13 -0.6 549,207 - GFF1699 0.13 -0.4 549,317 + GFF1699 0.15 -0.7 549,592 - GFF1699 0.19 +0.4 549,833 + GFF1699 0.23 -0.4 549,833 + GFF1699 0.23 -0.2 549,833 + GFF1699 0.23 -0.8 549,833 - GFF1699 0.23 +0.1 549,834 - GFF1699 0.23 -1.0 549,834 - GFF1699 0.23 -1.6 549,834 - GFF1699 0.23 +1.7 549,834 - GFF1699 0.23 +3.1 549,834 - GFF1699 0.23 -1.0 549,932 + GFF1699 0.25 -2.2 549,932 + GFF1699 0.25 -1.2 549,933 - GFF1699 0.25 -0.3 550,319 + GFF1699 0.32 +1.1 550,682 + GFF1699 0.38 +0.2 550,682 + GFF1699 0.38 -0.1 550,739 + GFF1699 0.39 +1.5 550,832 + GFF1699 0.40 -2.9 550,833 - GFF1699 0.40 -0.2 551,645 + GFF1699 0.54 -0.6 551,645 + GFF1699 0.54 -0.2 551,645 + GFF1699 0.54 +1.6 551,646 - GFF1699 0.54 -1.3 551,646 - GFF1699 0.54 +0.1 551,837 + GFF1699 0.57 +0.2 551,837 + GFF1699 0.57 -0.7 551,838 - GFF1699 0.57 -1.7 551,940 - GFF1699 0.59 +0.2 551,940 - GFF1699 0.59 -0.2 551,940 - GFF1699 0.59 -0.3 552,005 + GFF1699 0.60 -1.0 552,005 + GFF1699 0.60 -0.4 552,005 + GFF1699 0.60 -3.2 552,680 + GFF1699 0.72 -1.6 552,681 - GFF1699 0.72 -0.5 552,704 + GFF1699 0.72 -1.9 552,705 - GFF1699 0.72 -0.2 553,067 + GFF1699 0.78 -0.2 553,067 + GFF1699 0.78 -0.2 553,085 + GFF1699 0.79 -0.6 553,109 + GFF1699 0.79 -0.6 553,328 + GFF1699 0.83 -0.2 553,328 + GFF1699 0.83 -0.3 553,329 - GFF1699 0.83 -1.0 553,499 + GFF1699 0.86 -1.1 553,499 + GFF1699 0.86 -0.4 553,499 + GFF1699 0.86 +0.4 553,500 - GFF1699 0.86 -1.2 553,719 - GFF1699 0.89 +0.7 553,841 + -0.4 553,841 + +0.1 553,841 + +0.1 553,841 + -0.5 553,841 + -2.8 553,841 + -0.1 553,841 + -0.1 553,842 - -1.0 554,070 - +0.2 554,372 + -0.3 554,372 + +0.9 554,372 + +1.0 554,372 + +1.6 554,372 + -0.2 554,372 + +0.5 554,373 - +0.6 554,373 - +0.3 554,373 - -1.4 554,404 - -1.8 554,442 + +0.8 554,442 + +1.5 554,442 + +0.1 554,442 + +0.0 554,443 - +0.3 554,443 - +1.1 554,443 - +1.0 554,443 - -0.3 554,470 + +1.0 554,470 + -0.3 554,470 + +0.3 554,470 + -0.0 554,470 + -0.6 554,471 - +1.4 554,471 - +1.0 554,471 - -0.6 554,471 - -0.7 554,472 + +0.8 554,472 + -1.4 554,472 + +0.4 554,472 + +0.5 554,473 - +1.2 554,473 - +0.7 554,473 - +0.2 554,473 - +1.4 554,641 + GFF1700 0.15 -0.3 554,642 - GFF1700 0.15 +0.6 554,642 - GFF1700 0.15 +0.0 554,642 - GFF1700 0.15 -1.0 554,920 + GFF1700 0.39 -0.1 554,920 + GFF1700 0.39 +2.8 555,328 + GFF1700 0.75 -0.5 555,328 + GFF1700 0.75 -0.1 555,328 + GFF1700 0.75 -0.7 555,329 - GFF1700 0.75 +0.4 555,329 - GFF1700 0.75 -0.6
Or see this region's nucleotide sequence