Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1695 and GFF1696 overlap by 4 nucleotides GFF1696 and GFF1697 are separated by 35 nucleotides GFF1697 and GFF1698 are separated by 4 nucleotides GFF1698 and GFF1699 overlap by 1 nucleotides
GFF1695 - haloacid dehalogenase-like hydrolase, at 545,658 to 546,464
GFF1695
GFF1696 - Probable MFS transporter precursor, at 546,461 to 547,714
GFF1696
GFF1697 - hypothetical protein, at 547,750 to 548,130
GFF1697
GFF1698 - Ferredoxin, at 548,135 to 548,461
GFF1698
GFF1699 - Excinuclease ABC subunit A, dimeric form, at 548,461 to 554,340
GFF1699
Position (kb) 546
547
548 Strain fitness (log2 ratio) -1
0
1
2 at 545.570 kb on + strand at 545.571 kb on - strand at 545.943 kb on + strand, within GFF1695 at 545.943 kb on + strand, within GFF1695 at 545.944 kb on - strand, within GFF1695 at 545.944 kb on - strand, within GFF1695 at 545.944 kb on - strand, within GFF1695 at 546.160 kb on + strand, within GFF1695 at 546.161 kb on - strand, within GFF1695 at 546.161 kb on - strand, within GFF1695 at 546.161 kb on - strand, within GFF1695 at 546.161 kb on - strand, within GFF1695 at 546.161 kb on - strand, within GFF1695 at 546.277 kb on - strand, within GFF1695 at 546.384 kb on + strand at 546.384 kb on + strand at 546.385 kb on - strand at 546.572 kb on + strand at 546.573 kb on - strand at 546.899 kb on + strand, within GFF1696 at 546.899 kb on + strand, within GFF1696 at 547.190 kb on + strand, within GFF1696 at 547.191 kb on - strand, within GFF1696 at 547.473 kb on - strand, within GFF1696 at 547.473 kb on - strand, within GFF1696 at 547.553 kb on + strand, within GFF1696 at 547.553 kb on + strand, within GFF1696 at 547.553 kb on + strand, within GFF1696 at 547.553 kb on + strand, within GFF1696 at 547.554 kb on - strand, within GFF1696 at 547.554 kb on - strand, within GFF1696 at 547.554 kb on - strand, within GFF1696 at 547.554 kb on - strand, within GFF1696 at 547.855 kb on - strand, within GFF1697 at 548.280 kb on + strand, within GFF1698
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 545,570 + -1.4 545,571 - -1.6 545,943 + GFF1695 0.35 +0.9 545,943 + GFF1695 0.35 -1.5 545,944 - GFF1695 0.35 +0.3 545,944 - GFF1695 0.35 -0.3 545,944 - GFF1695 0.35 +1.0 546,160 + GFF1695 0.62 -1.6 546,161 - GFF1695 0.62 +0.5 546,161 - GFF1695 0.62 +2.3 546,161 - GFF1695 0.62 +1.5 546,161 - GFF1695 0.62 +2.4 546,161 - GFF1695 0.62 +0.5 546,277 - GFF1695 0.77 -0.9 546,384 + -0.3 546,384 + +1.4 546,385 - -0.4 546,572 + +0.4 546,573 - -0.0 546,899 + GFF1696 0.35 +0.6 546,899 + GFF1696 0.35 +0.8 547,190 + GFF1696 0.58 +1.2 547,191 - GFF1696 0.58 -0.2 547,473 - GFF1696 0.81 +0.1 547,473 - GFF1696 0.81 -0.2 547,553 + GFF1696 0.87 +0.9 547,553 + GFF1696 0.87 -0.7 547,553 + GFF1696 0.87 -0.7 547,553 + GFF1696 0.87 +0.3 547,554 - GFF1696 0.87 +0.0 547,554 - GFF1696 0.87 +0.1 547,554 - GFF1696 0.87 -1.1 547,554 - GFF1696 0.87 -1.0 547,855 - GFF1697 0.28 +1.1 548,280 + GFF1698 0.44 +0.9
Or see this region's nucleotide sequence