Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1615 and GFF1616 are separated by 94 nucleotides GFF1616 and GFF1617 are separated by 710 nucleotides GFF1617 and GFF1618 are separated by 0 nucleotides
GFF1615 - NAD-dependent epimerase/dehydratase, at 469,668 to 470,621
GFF1615
GFF1616 - hypothetical protein, at 470,716 to 471,042
GFF1616
GFF1617 - hypothetical protein, at 471,753 to 471,893
GFF1617
GFF1618 - Sensory box histidine kinase/response regulator, at 471,894 to 473,879
GFF1618
Position (kb) 470
471
472 Strain fitness (log2 ratio) -2
-1
0
1 at 470.034 kb on + strand, within GFF1615 at 470.559 kb on + strand at 470.559 kb on + strand at 470.560 kb on - strand at 470.560 kb on - strand at 470.560 kb on - strand at 470.560 kb on - strand at 470.560 kb on - strand at 470.560 kb on - strand at 470.598 kb on + strand at 470.598 kb on + strand at 470.654 kb on + strand at 470.852 kb on - strand, within GFF1616 at 470.932 kb on + strand, within GFF1616 at 470.932 kb on + strand, within GFF1616 at 470.933 kb on - strand, within GFF1616 at 470.933 kb on - strand, within GFF1616 at 470.933 kb on - strand, within GFF1616 at 470.933 kb on - strand, within GFF1616 at 471.040 kb on + strand at 471.040 kb on + strand at 471.314 kb on + strand at 471.314 kb on + strand at 471.314 kb on + strand at 471.315 kb on - strand at 471.315 kb on - strand at 471.315 kb on - strand at 471.315 kb on - strand at 471.315 kb on - strand at 471.315 kb on - strand at 471.441 kb on + strand at 471.441 kb on + strand at 471.441 kb on + strand at 471.441 kb on + strand at 471.442 kb on - strand at 471.453 kb on + strand at 471.453 kb on + strand at 471.453 kb on + strand at 471.453 kb on + strand at 471.453 kb on + strand at 471.453 kb on + strand at 471.453 kb on + strand at 471.454 kb on - strand at 471.472 kb on - strand at 471.546 kb on - strand at 471.570 kb on + strand at 471.570 kb on + strand at 471.570 kb on + strand at 471.570 kb on + strand at 471.571 kb on - strand at 471.571 kb on - strand at 471.571 kb on - strand at 471.571 kb on - strand at 471.576 kb on + strand at 471.577 kb on - strand at 471.577 kb on - strand at 471.608 kb on - strand at 471.623 kb on - strand at 471.623 kb on - strand at 471.623 kb on - strand at 471.647 kb on - strand at 471.648 kb on + strand at 471.648 kb on + strand at 471.648 kb on + strand at 471.648 kb on + strand at 471.648 kb on + strand at 471.648 kb on + strand at 471.648 kb on + strand at 471.649 kb on - strand at 471.649 kb on - strand at 471.649 kb on - strand at 471.649 kb on - strand at 471.649 kb on - strand at 471.649 kb on - strand at 471.762 kb on + strand at 471.762 kb on + strand at 471.808 kb on + strand, within GFF1617
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 470,034 + GFF1615 0.38 +0.1 470,559 + -0.1 470,559 + -0.6 470,560 - -1.0 470,560 - +0.0 470,560 - +1.2 470,560 - -0.2 470,560 - +0.1 470,560 - -0.3 470,598 + +0.9 470,598 + +0.4 470,654 + -0.2 470,852 - GFF1616 0.42 +0.0 470,932 + GFF1616 0.66 -2.3 470,932 + GFF1616 0.66 +0.2 470,933 - GFF1616 0.66 -2.4 470,933 - GFF1616 0.66 +0.4 470,933 - GFF1616 0.66 -0.0 470,933 - GFF1616 0.66 -2.6 471,040 + +0.1 471,040 + -0.7 471,314 + -0.7 471,314 + +0.1 471,314 + -0.4 471,315 - -1.7 471,315 - -0.5 471,315 - +0.7 471,315 - +0.7 471,315 - +0.3 471,315 - -1.1 471,441 + +0.1 471,441 + -1.8 471,441 + -0.2 471,441 + +0.3 471,442 - -0.4 471,453 + +0.7 471,453 + -0.4 471,453 + +1.4 471,453 + +0.0 471,453 + +0.3 471,453 + +0.8 471,453 + +0.7 471,454 - -0.1 471,472 - -0.6 471,546 - +0.3 471,570 + +1.5 471,570 + -2.7 471,570 + -0.1 471,570 + +0.4 471,571 - -0.1 471,571 - -2.2 471,571 - -0.6 471,571 - +0.0 471,576 + -1.2 471,577 - +0.6 471,577 - +1.2 471,608 - -2.2 471,623 - -0.6 471,623 - -0.9 471,623 - +0.6 471,647 - -1.8 471,648 + -0.3 471,648 + +0.4 471,648 + -0.1 471,648 + +0.8 471,648 + +0.9 471,648 + -1.2 471,648 + -1.4 471,649 - -1.7 471,649 - +1.7 471,649 - -0.8 471,649 - -1.0 471,649 - -1.1 471,649 - +0.7 471,762 + +0.0 471,762 + -2.4 471,808 + GFF1617 0.39 +0.3
Or see this region's nucleotide sequence