Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1614 and GFF1615 are separated by 7 nucleotides GFF1615 and GFF1616 are separated by 94 nucleotides
GFF1614 - Soluble lytic murein transglycosylase precursor (EC 3.2.1.-), at 467,699 to 469,660
GFF1614
GFF1615 - NAD-dependent epimerase/dehydratase, at 469,668 to 470,621
GFF1615
GFF1616 - hypothetical protein, at 470,716 to 471,042
GFF1616
Position (kb) 469
470
471 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 468.702 kb on - strand, within GFF1614 at 468.807 kb on - strand, within GFF1614 at 468.807 kb on - strand, within GFF1614 at 468.974 kb on + strand, within GFF1614 at 468.975 kb on - strand, within GFF1614 at 468.975 kb on - strand, within GFF1614 at 468.975 kb on - strand, within GFF1614 at 468.975 kb on - strand, within GFF1614 at 468.975 kb on - strand, within GFF1614 at 469.181 kb on + strand, within GFF1614 at 469.181 kb on + strand, within GFF1614 at 469.181 kb on + strand, within GFF1614 at 469.182 kb on - strand, within GFF1614 at 469.182 kb on - strand, within GFF1614 at 469.182 kb on - strand, within GFF1614 at 469.182 kb on - strand, within GFF1614 at 469.182 kb on - strand, within GFF1614 at 469.182 kb on - strand, within GFF1614 at 469.187 kb on + strand, within GFF1614 at 469.187 kb on + strand, within GFF1614 at 469.187 kb on + strand, within GFF1614 at 469.188 kb on - strand, within GFF1614 at 469.188 kb on - strand, within GFF1614 at 469.368 kb on - strand, within GFF1614 at 469.424 kb on + strand, within GFF1614 at 469.523 kb on + strand at 469.524 kb on - strand at 469.524 kb on - strand at 469.556 kb on + strand at 469.556 kb on + strand at 469.557 kb on - strand at 469.557 kb on - strand at 470.034 kb on + strand, within GFF1615 at 470.559 kb on + strand at 470.559 kb on + strand at 470.560 kb on - strand at 470.560 kb on - strand at 470.560 kb on - strand at 470.560 kb on - strand at 470.560 kb on - strand at 470.560 kb on - strand at 470.598 kb on + strand at 470.598 kb on + strand at 470.654 kb on + strand at 470.852 kb on - strand, within GFF1616 at 470.932 kb on + strand, within GFF1616 at 470.932 kb on + strand, within GFF1616 at 470.933 kb on - strand, within GFF1616 at 470.933 kb on - strand, within GFF1616 at 470.933 kb on - strand, within GFF1616 at 470.933 kb on - strand, within GFF1616 at 471.040 kb on + strand at 471.040 kb on + strand at 471.314 kb on + strand at 471.314 kb on + strand at 471.314 kb on + strand at 471.315 kb on - strand at 471.315 kb on - strand at 471.315 kb on - strand at 471.315 kb on - strand at 471.315 kb on - strand at 471.315 kb on - strand at 471.441 kb on + strand at 471.441 kb on + strand at 471.441 kb on + strand at 471.441 kb on + strand at 471.442 kb on - strand at 471.453 kb on + strand at 471.453 kb on + strand at 471.453 kb on + strand at 471.453 kb on + strand at 471.453 kb on + strand at 471.453 kb on + strand at 471.453 kb on + strand at 471.454 kb on - strand at 471.472 kb on - strand at 471.546 kb on - strand at 471.570 kb on + strand at 471.570 kb on + strand at 471.570 kb on + strand at 471.570 kb on + strand at 471.571 kb on - strand at 471.571 kb on - strand at 471.571 kb on - strand at 471.571 kb on - strand at 471.576 kb on + strand at 471.577 kb on - strand at 471.577 kb on - strand at 471.608 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 468,702 - GFF1614 0.51 -0.3 468,807 - GFF1614 0.56 -1.9 468,807 - GFF1614 0.56 +1.0 468,974 + GFF1614 0.65 -1.1 468,975 - GFF1614 0.65 -2.0 468,975 - GFF1614 0.65 -2.0 468,975 - GFF1614 0.65 +0.4 468,975 - GFF1614 0.65 +1.2 468,975 - GFF1614 0.65 -0.1 469,181 + GFF1614 0.76 +2.5 469,181 + GFF1614 0.76 -0.0 469,181 + GFF1614 0.76 -1.7 469,182 - GFF1614 0.76 +0.7 469,182 - GFF1614 0.76 -1.1 469,182 - GFF1614 0.76 -0.0 469,182 - GFF1614 0.76 -2.7 469,182 - GFF1614 0.76 -0.7 469,182 - GFF1614 0.76 -0.4 469,187 + GFF1614 0.76 -0.2 469,187 + GFF1614 0.76 -0.1 469,187 + GFF1614 0.76 -0.9 469,188 - GFF1614 0.76 -0.7 469,188 - GFF1614 0.76 -1.3 469,368 - GFF1614 0.85 -1.0 469,424 + GFF1614 0.88 -0.6 469,523 + -0.7 469,524 - -0.0 469,524 - -2.8 469,556 + -0.6 469,556 + +0.5 469,557 - -0.6 469,557 - +0.6 470,034 + GFF1615 0.38 +0.1 470,559 + -0.1 470,559 + -0.6 470,560 - -1.0 470,560 - +0.0 470,560 - +1.2 470,560 - -0.2 470,560 - +0.1 470,560 - -0.3 470,598 + +0.9 470,598 + +0.4 470,654 + -0.2 470,852 - GFF1616 0.42 +0.0 470,932 + GFF1616 0.66 -2.3 470,932 + GFF1616 0.66 +0.2 470,933 - GFF1616 0.66 -2.4 470,933 - GFF1616 0.66 +0.4 470,933 - GFF1616 0.66 -0.0 470,933 - GFF1616 0.66 -2.6 471,040 + +0.1 471,040 + -0.7 471,314 + -0.7 471,314 + +0.1 471,314 + -0.4 471,315 - -1.7 471,315 - -0.5 471,315 - +0.7 471,315 - +0.7 471,315 - +0.3 471,315 - -1.1 471,441 + +0.1 471,441 + -1.8 471,441 + -0.2 471,441 + +0.3 471,442 - -0.4 471,453 + +0.7 471,453 + -0.4 471,453 + +1.4 471,453 + +0.0 471,453 + +0.3 471,453 + +0.8 471,453 + +0.7 471,454 - -0.1 471,472 - -0.6 471,546 - +0.3 471,570 + +1.5 471,570 + -2.7 471,570 + -0.1 471,570 + +0.4 471,571 - -0.1 471,571 - -2.2 471,571 - -0.6 471,571 - +0.0 471,576 + -1.2 471,577 - +0.6 471,577 - +1.2 471,608 - -2.2
Or see this region's nucleotide sequence