Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1599 and GFF1600 are separated by 111 nucleotides GFF1600 and GFF1601 are separated by 88 nucleotides GFF1601 and GFF1602 are separated by 6 nucleotides
GFF1599 - hypothetical protein, at 454,519 to 455,274
GFF1599
GFF1600 - N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157), at 455,386 to 456,804
GFF1600
GFF1601 - lipoprotein, putative, at 456,893 to 457,717
GFF1601
GFF1602 - Arsenic efflux pump protein, at 457,724 to 459,004
GFF1602
Position (kb) 455
456
457 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 454.398 kb on + strand at 454.398 kb on + strand at 454.398 kb on + strand at 454.398 kb on + strand at 454.398 kb on + strand at 454.398 kb on + strand at 454.398 kb on + strand at 454.398 kb on + strand at 454.399 kb on - strand at 454.399 kb on - strand at 454.399 kb on - strand at 454.399 kb on - strand at 454.399 kb on - strand at 454.478 kb on - strand at 454.681 kb on + strand, within GFF1599 at 454.681 kb on + strand, within GFF1599 at 454.681 kb on + strand, within GFF1599 at 454.681 kb on + strand, within GFF1599 at 454.789 kb on + strand, within GFF1599 at 454.790 kb on - strand, within GFF1599 at 454.790 kb on - strand, within GFF1599 at 454.790 kb on - strand, within GFF1599 at 455.273 kb on - strand at 455.276 kb on + strand at 455.276 kb on + strand at 455.276 kb on + strand at 455.276 kb on + strand at 455.277 kb on - strand at 455.277 kb on - strand at 455.277 kb on - strand at 455.277 kb on - strand at 455.277 kb on - strand at 455.277 kb on - strand at 455.277 kb on - strand at 456.941 kb on + strand at 456.942 kb on - strand at 456.966 kb on - strand at 457.073 kb on + strand, within GFF1601 at 457.073 kb on + strand, within GFF1601 at 457.361 kb on + strand, within GFF1601 at 457.362 kb on - strand, within GFF1601 at 457.577 kb on + strand, within GFF1601 at 457.577 kb on + strand, within GFF1601 at 457.577 kb on - strand, within GFF1601 at 457.578 kb on - strand, within GFF1601 at 457.578 kb on - strand, within GFF1601 at 457.578 kb on - strand, within GFF1601 at 457.679 kb on + strand at 457.725 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 454,398 + -0.7 454,398 + +0.3 454,398 + -1.7 454,398 + -2.4 454,398 + +0.4 454,398 + +0.5 454,398 + -0.1 454,398 + -2.2 454,399 - -0.6 454,399 - +1.3 454,399 - +0.0 454,399 - +0.8 454,399 - +0.5 454,478 - -1.0 454,681 + GFF1599 0.21 -0.5 454,681 + GFF1599 0.21 +0.1 454,681 + GFF1599 0.21 -0.4 454,681 + GFF1599 0.21 +0.9 454,789 + GFF1599 0.36 -0.3 454,790 - GFF1599 0.36 -0.2 454,790 - GFF1599 0.36 -0.2 454,790 - GFF1599 0.36 -1.1 455,273 - -0.3 455,276 + +0.1 455,276 + +0.5 455,276 + -3.1 455,276 + -0.1 455,277 - +0.1 455,277 - +0.5 455,277 - +0.2 455,277 - -1.1 455,277 - +0.2 455,277 - +1.5 455,277 - +0.4 456,941 + -0.3 456,942 - +0.6 456,966 - +0.3 457,073 + GFF1601 0.22 -0.2 457,073 + GFF1601 0.22 +0.1 457,361 + GFF1601 0.57 +0.5 457,362 - GFF1601 0.57 -1.3 457,577 + GFF1601 0.83 +0.7 457,577 + GFF1601 0.83 -0.4 457,577 - GFF1601 0.83 -0.2 457,578 - GFF1601 0.83 -0.1 457,578 - GFF1601 0.83 +0.2 457,578 - GFF1601 0.83 -0.2 457,679 + -1.4 457,725 + -1.1
Or see this region's nucleotide sequence