Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1595 and GFF1596 are separated by 111 nucleotides GFF1596 and GFF1597 are separated by 47 nucleotides GFF1597 and GFF1598 are separated by 133 nucleotides GFF1598 and GFF1599 are separated by 149 nucleotides
GFF1595 - 2,5-dichlorohydroquinone reductive dechlorinase (EC 2.5.1.-), at 450,350 to 451,330
GFF1595
GFF1596 - Hemerythrin, at 451,442 to 451,825
GFF1596
GFF1597 - Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16), at 451,873 to 453,729
GFF1597
GFF1598 - Transcriptional regulator, AsnC family, at 453,863 to 454,369
GFF1598
GFF1599 - hypothetical protein, at 454,519 to 455,274
GFF1599
Position (kb) 451
452
453
454 Strain fitness (log2 ratio) -2
-1
0
1
2 at 450.960 kb on - strand, within GFF1595 at 450.960 kb on - strand, within GFF1595 at 450.960 kb on - strand, within GFF1595 at 450.972 kb on - strand, within GFF1595 at 451.073 kb on + strand, within GFF1595 at 451.073 kb on + strand, within GFF1595 at 451.073 kb on + strand, within GFF1595 at 451.407 kb on + strand at 451.407 kb on + strand at 451.407 kb on + strand at 451.407 kb on + strand at 451.408 kb on - strand at 451.408 kb on - strand at 451.408 kb on - strand at 451.467 kb on - strand at 451.467 kb on - strand at 451.610 kb on - strand, within GFF1596 at 451.745 kb on + strand, within GFF1596 at 451.745 kb on + strand, within GFF1596 at 451.745 kb on + strand, within GFF1596 at 451.787 kb on + strand at 451.788 kb on - strand at 451.788 kb on - strand at 451.788 kb on - strand at 451.788 kb on - strand at 453.761 kb on + strand at 453.761 kb on + strand at 453.826 kb on + strand at 453.829 kb on + strand at 453.843 kb on - strand at 454.176 kb on - strand, within GFF1598 at 454.371 kb on + strand at 454.372 kb on - strand at 454.398 kb on + strand at 454.398 kb on + strand at 454.398 kb on + strand at 454.398 kb on + strand at 454.398 kb on + strand at 454.398 kb on + strand at 454.398 kb on + strand at 454.398 kb on + strand at 454.399 kb on - strand at 454.399 kb on - strand at 454.399 kb on - strand at 454.399 kb on - strand at 454.399 kb on - strand at 454.478 kb on - strand at 454.681 kb on + strand, within GFF1599 at 454.681 kb on + strand, within GFF1599 at 454.681 kb on + strand, within GFF1599 at 454.681 kb on + strand, within GFF1599
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 450,960 - GFF1595 0.62 +0.2 450,960 - GFF1595 0.62 +0.1 450,960 - GFF1595 0.62 -0.3 450,972 - GFF1595 0.63 +0.4 451,073 + GFF1595 0.74 +0.7 451,073 + GFF1595 0.74 +0.2 451,073 + GFF1595 0.74 -1.7 451,407 + +1.0 451,407 + -1.3 451,407 + -0.4 451,407 + +0.8 451,408 - +0.3 451,408 - -0.5 451,408 - -1.1 451,467 - -0.6 451,467 - -0.1 451,610 - GFF1596 0.44 -1.1 451,745 + GFF1596 0.79 -0.3 451,745 + GFF1596 0.79 -0.6 451,745 + GFF1596 0.79 -0.0 451,787 + +0.0 451,788 - +1.7 451,788 - -1.7 451,788 - -0.2 451,788 - +0.9 453,761 + +0.5 453,761 + -0.7 453,826 + -0.7 453,829 + -2.0 453,843 - +1.9 454,176 - GFF1598 0.62 +0.0 454,371 + +1.0 454,372 - +0.1 454,398 + -0.7 454,398 + +0.3 454,398 + -1.7 454,398 + -2.4 454,398 + +0.4 454,398 + +0.5 454,398 + -0.1 454,398 + -2.2 454,399 - -0.6 454,399 - +1.3 454,399 - +0.0 454,399 - +0.8 454,399 - +0.5 454,478 - -1.0 454,681 + GFF1599 0.21 -0.5 454,681 + GFF1599 0.21 +0.1 454,681 + GFF1599 0.21 -0.4 454,681 + GFF1599 0.21 +0.9
Or see this region's nucleotide sequence