Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1548 and GFF1549 are separated by 116 nucleotides GFF1549 and GFF1550 are separated by 15 nucleotides GFF1550 and GFF1551 are separated by 141 nucleotides
GFF1548 - hypothetical protein, at 403,352 to 404,497
GFF1548
GFF1549 - Transcriptional regulator, at 404,614 to 405,552
GFF1549
GFF1550 - hypothetical protein, at 405,568 to 406,287
GFF1550
GFF1551 - Acetolactate synthase large subunit (EC 2.2.1.6), at 406,429 to 407,991
GFF1551
Position (kb) 404
405
406 Strain fitness (log2 ratio) -2
-1
0
1 at 403.647 kb on + strand, within GFF1548 at 403.648 kb on - strand, within GFF1548 at 403.648 kb on - strand, within GFF1548 at 403.648 kb on - strand, within GFF1548 at 403.648 kb on - strand, within GFF1548 at 403.725 kb on + strand, within GFF1548 at 403.725 kb on + strand, within GFF1548 at 403.726 kb on - strand, within GFF1548 at 403.726 kb on - strand, within GFF1548 at 403.726 kb on - strand, within GFF1548 at 403.726 kb on - strand, within GFF1548 at 403.726 kb on - strand, within GFF1548 at 403.744 kb on - strand, within GFF1548 at 403.869 kb on + strand, within GFF1548 at 404.515 kb on + strand at 404.516 kb on - strand at 404.653 kb on + strand at 404.653 kb on + strand at 404.654 kb on - strand at 405.873 kb on - strand, within GFF1550 at 405.900 kb on - strand, within GFF1550 at 406.452 kb on - strand at 406.452 kb on - strand at 406.452 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 403,647 + GFF1548 0.26 +0.3 403,648 - GFF1548 0.26 +0.7 403,648 - GFF1548 0.26 +1.1 403,648 - GFF1548 0.26 -1.0 403,648 - GFF1548 0.26 +0.1 403,725 + GFF1548 0.33 +0.4 403,725 + GFF1548 0.33 -1.9 403,726 - GFF1548 0.33 -0.2 403,726 - GFF1548 0.33 +1.4 403,726 - GFF1548 0.33 -0.1 403,726 - GFF1548 0.33 +0.1 403,726 - GFF1548 0.33 -2.3 403,744 - GFF1548 0.34 +1.1 403,869 + GFF1548 0.45 -0.0 404,515 + +1.0 404,516 - -0.3 404,653 + +0.8 404,653 + -1.3 404,654 - -1.0 405,873 - GFF1550 0.42 +0.6 405,900 - GFF1550 0.46 +0.3 406,452 - -0.1 406,452 - -0.6 406,452 - -2.2
Or see this region's nucleotide sequence