Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1404 and GFF1405 are separated by 9 nucleotides GFF1405 and GFF1406 are separated by 2 nucleotides GFF1406 and GFF1407 are separated by 13 nucleotides GFF1407 and GFF1408 are separated by 2 nucleotides
GFF1404 - Flagellar hook-associated protein FlgL, at 266,167 to 267,384
GFF1404
GFF1405 - hypothetical protein, at 267,394 to 267,525
GFF1405
GFF1406 - Flagellar hook-associated protein FlgK, at 267,528 to 269,441
GFF1406
GFF1407 - Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-), at 269,455 to 270,315
GFF1407
GFF1408 - Flagellar P-ring protein FlgI, at 270,318 to 271,406
GFF1408
Position (kb) 267
268
269
270 Strain fitness (log2 ratio) -2
-1
0
1
2 at 266.621 kb on + strand, within GFF1404 at 266.622 kb on - strand, within GFF1404 at 266.622 kb on - strand, within GFF1404 at 266.678 kb on + strand, within GFF1404 at 266.679 kb on - strand, within GFF1404 at 266.679 kb on - strand, within GFF1404 at 266.679 kb on - strand, within GFF1404 at 266.679 kb on - strand, within GFF1404 at 266.679 kb on - strand, within GFF1404 at 266.717 kb on + strand, within GFF1404 at 266.717 kb on + strand, within GFF1404 at 266.718 kb on - strand, within GFF1404 at 266.978 kb on + strand, within GFF1404 at 267.359 kb on + strand at 267.359 kb on + strand at 267.519 kb on + strand at 267.525 kb on + strand at 267.526 kb on - strand at 267.526 kb on - strand at 267.530 kb on - strand at 267.530 kb on - strand at 267.602 kb on - strand at 267.763 kb on + strand, within GFF1406 at 267.763 kb on + strand, within GFF1406 at 267.790 kb on + strand, within GFF1406 at 268.087 kb on + strand, within GFF1406 at 268.087 kb on + strand, within GFF1406 at 268.816 kb on + strand, within GFF1406 at 268.817 kb on - strand, within GFF1406 at 269.179 kb on + strand, within GFF1406 at 269.236 kb on + strand, within GFF1406 at 269.237 kb on - strand, within GFF1406 at 269.345 kb on - strand at 269.705 kb on + strand, within GFF1407 at 269.706 kb on - strand, within GFF1407 at 269.706 kb on - strand, within GFF1407
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 266,621 + GFF1404 0.37 +0.4 266,622 - GFF1404 0.37 +0.2 266,622 - GFF1404 0.37 -2.6 266,678 + GFF1404 0.42 +0.0 266,679 - GFF1404 0.42 +1.4 266,679 - GFF1404 0.42 +1.0 266,679 - GFF1404 0.42 -1.4 266,679 - GFF1404 0.42 +0.0 266,679 - GFF1404 0.42 +2.2 266,717 + GFF1404 0.45 +0.6 266,717 + GFF1404 0.45 -2.1 266,718 - GFF1404 0.45 -0.6 266,978 + GFF1404 0.67 +0.6 267,359 + +0.2 267,359 + -1.6 267,519 + -0.1 267,525 + +0.1 267,526 - +0.3 267,526 - -0.1 267,530 - -0.6 267,530 - -0.8 267,602 - +0.7 267,763 + GFF1406 0.12 -1.1 267,763 + GFF1406 0.12 +0.7 267,790 + GFF1406 0.14 -2.0 268,087 + GFF1406 0.29 -2.4 268,087 + GFF1406 0.29 -0.1 268,816 + GFF1406 0.67 -0.5 268,817 - GFF1406 0.67 -1.1 269,179 + GFF1406 0.86 -1.1 269,236 + GFF1406 0.89 +0.2 269,237 - GFF1406 0.89 +0.0 269,345 - +0.6 269,705 + GFF1407 0.29 -1.1 269,706 - GFF1407 0.29 -0.3 269,706 - GFF1407 0.29 -0.7
Or see this region's nucleotide sequence