Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF132 and GFF133 are separated by 23 nucleotides GFF133 and GFF134 overlap by 38 nucleotides GFF134 and GFF135 are separated by 70 nucleotides GFF135 and GFF136 are separated by 1 nucleotides
GFF132 - TRAP dicarboxylate transporter, DctM subunit, unknown substrate 3, at 147,228 to 148,547
GFF132
GFF133 - probable carboxylesterase, at 148,571 to 149,284
GFF133
GFF134 - Permease of the drug/metabolite transporter (DMT) superfamily, at 149,247 to 150,206
GFF134
GFF135 - Transcriptional regulator, AsnC family, at 150,277 to 150,756
GFF135
GFF136 - Transcriptional regulator, LysR family, at 150,758 to 151,672
GFF136
Position (kb) 149
150
151 Strain fitness (log2 ratio) -2
-1
0
1 at 148.446 kb on + strand at 148.447 kb on - strand at 148.570 kb on + strand at 148.570 kb on + strand at 148.811 kb on + strand, within GFF133 at 148.812 kb on - strand, within GFF133 at 149.205 kb on - strand, within GFF133 at 149.317 kb on + strand at 149.437 kb on + strand, within GFF134 at 149.438 kb on - strand, within GFF134 at 149.482 kb on + strand, within GFF134 at 149.482 kb on + strand, within GFF134 at 149.482 kb on + strand, within GFF134 at 149.521 kb on + strand, within GFF134 at 149.683 kb on + strand, within GFF134 at 149.684 kb on - strand, within GFF134 at 150.112 kb on + strand at 150.113 kb on - strand at 150.277 kb on - strand at 150.288 kb on + strand at 150.289 kb on - strand at 151.161 kb on + strand, within GFF136 at 151.162 kb on - strand, within GFF136 at 151.162 kb on - strand, within GFF136
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 148,446 + +1.1 148,447 - -1.5 148,570 + -0.2 148,570 + +0.8 148,811 + GFF133 0.34 -0.2 148,812 - GFF133 0.34 -0.5 149,205 - GFF133 0.89 -1.2 149,317 + +0.2 149,437 + GFF134 0.20 +0.1 149,438 - GFF134 0.20 +0.8 149,482 + GFF134 0.24 +1.4 149,482 + GFF134 0.24 +0.2 149,482 + GFF134 0.24 +0.4 149,521 + GFF134 0.29 +0.2 149,683 + GFF134 0.45 -2.3 149,684 - GFF134 0.46 -0.0 150,112 + +1.0 150,113 - -1.8 150,277 - +0.4 150,288 + +0.6 150,289 - +0.3 151,161 + GFF136 0.44 -0.5 151,162 - GFF136 0.44 -1.9 151,162 - GFF136 0.44 -0.9
Or see this region's nucleotide sequence